JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
YIF1B_chr19_38298558_38320947	0/0	t0005	1826	10	10	0	0	0	0	copy fasta	YIF1B	chr19	38298558	38320947
YIF1B_chr19_38298558_38320947	0/0	t0006	1825	8	8	0	0	0	0	copy fasta	YIF1B	chr19	38298558	38320947
YIF1B_chr19_38298558_38320947	0/0	t0007	1822	5	1	3	0	0	1	copy fasta	YIF1B	chr19	38298558	38320947
YIF1B_chr19_38298558_38320947	0/0	t0008	1825	5	0	0	5	0	0	copy fasta	YIF1B	chr19	38298558	38320947
YIF1B_chr19_38298558_38320947	0/0	t0009	1825	4	1	0	1	0	2	copy fasta	YIF1B	chr19	38298558	38320947
YIF1B_chr19_38298558_38320947	0/0	t0010	1819	4	4	0	0	0	0	copy fasta	YIF1B	chr19	38298558	38320947
YIF1B_chr19_38298558_38320947	0/0	t0011	1822	3	0	0	0	1	2	copy fasta	YIF1B	chr19	38298558	38320947
YIF1B_chr19_38298558_38320947	0/0	t0012	1840	2	2	0	0	0	0	copy fasta	YIF1B	chr19	38298558	38320947
YIF1B_chr19_38298558_38320947	0/0	t0013	1825	2	2	0	0	0	0	copy fasta	YIF1B	chr19	38298558	38320947
YIF1B_chr19_38298558_38320947	0/0	t0014	1825	2	0	0	2	0	0	copy fasta	YIF1B	chr19	38298558	38320947
YIF1B_chr19_38298558_38320947	0/0	t0015	1825	2	2	0	0	0	0	copy fasta	YIF1B	chr19	38298558	38320947
YIF1B_chr19_38298558_38320947	0/0	t0016	1840	2	0	0	2	0	0	copy fasta	YIF1B	chr19	38298558	38320947
YIF1B_chr19_38298558_38320947	0/0	t0017	1825	1	1	0	0	0	0	copy fasta	YIF1B	chr19	38298558	38320947
YIF1B_chr19_38298558_38320947	0/0	t0018	1825	1	0	0	0	0	1	copy fasta	YIF1B	chr19	38298558	38320947
YIF1B_chr19_38298558_38320947	0/0	t0019	1825	1	1	0	0	0	0	copy fasta	YIF1B	chr19	38298558	38320947
YIF1B_chr19_38298558_38320947	0/0	t0020	1825	1	1	0	0	0	0	copy fasta	YIF1B	chr19	38298558	38320947
YIF1B_chr19_38298558_38320947	0/0	t0021	1825	1	0	0	0	0	1	copy fasta	YIF1B	chr19	38298558	38320947
YIF1B_chr19_38298558_38320947	0/0	t0022	1825	1	1	0	0	0	0	copy fasta	YIF1B	chr19	38298558	38320947
YIF1B_chr19_38298558_38320947	0/0	t0023	1825	1	1	0	0	0	0	copy fasta	YIF1B	chr19	38298558	38320947
YIF1B_chr19_38298558_38320947	0/0	t0024	1841	1	0	0	1	0	0	copy fasta	YIF1B	chr19	38298558	38320947
YIF1B_chr19_38298558_38320947	0/0	t0025	1840	1	0	0	1	0	0	copy fasta	YIF1B	chr19	38298558	38320947
YIF1B_chr19_38298558_38320947	0/0	t0026	1840	1	1	0	0	0	0	copy fasta	YIF1B	chr19	38298558	38320947
YIF1B_chr19_38298558_38320947	0/0	t0027	1822	1	1	0	0	0	0	copy fasta	YIF1B	chr19	38298558	38320947
YIPF1_chr1_53846733_53894797	0/0	t0001	901	124	30	17	56	6	15	copy fasta	YIPF1	chr1	53846733	53894797
YIPF1_chr1_53846733_53894797	0/1	t0002	901	100	20	35	24	7	13	copy fasta	YIPF1	chr1	53846733	53894797
YIPF1_chr1_53846733_53894797	0/0	t0003	901	90	19	16	36	5	14	copy fasta	YIPF1	chr1	53846733	53894797
YIPF1_chr1_53846733_53894797	0/0	t0004	901	25	0	1	23	0	1	copy fasta	YIPF1	chr1	53846733	53894797
YIPF1_chr1_53846733_53894797	0/0	t0005	901	9	7	2	0	0	0	copy fasta	YIPF1	chr1	53846733	53894797
YIPF1_chr1_53846733_53894797	0/0	t0006	901	2	2	0	0	0	0	copy fasta	YIPF1	chr1	53846733	53894797
YIPF1_chr1_53846733_53894797	0/0	t0007	901	2	2	0	0	0	0	copy fasta	YIPF1	chr1	53846733	53894797
YIPF1_chr1_53846733_53894797	1/0	t0008	901	2	0	0	0	0	1	copy fasta	YIPF1	chr1	53846733	53894797
YIPF1_chr1_53846733_53894797	0/0	t0009	901	2	2	0	0	0	0	copy fasta	YIPF1	chr1	53846733	53894797
YIPF1_chr1_53846733_53894797	0/0	t0010	901	1	0	0	1	0	0	copy fasta	YIPF1	chr1	53846733	53894797
YIPF1_chr1_53846733_53894797	0/0	t0011	901	1	1	0	0	0	0	copy fasta	YIPF1	chr1	53846733	53894797
YIPF1_chr1_53846733_53894797	0/0	t0012	901	1	1	0	0	0	0	copy fasta	YIPF1	chr1	53846733	53894797
YIPF1_chr1_53846733_53894797	0/0	t0013	901	1	0	1	0	0	0	copy fasta	YIPF1	chr1	53846733	53894797
YIPF2_chr19_10917193_10933639	1/1	t0001	1161	375	85	62	171	11	44	copy fasta	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	t0002	1161	15	0	6	9	0	0	copy fasta	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	t0003	1162	7	0	3	0	2	2	copy fasta	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	t0004	1161	4	0	0	4	0	0	copy fasta	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	t0005	1161	2	0	2	0	0	0	copy fasta	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	t0006	1161	2	0	0	2	0	0	copy fasta	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	t0007	1161	1	0	0	0	1	0	copy fasta	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	t0008	1161	1	0	0	1	0	0	copy fasta	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	t0009	1171	1	0	0	1	0	0	copy fasta	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	t0010	1161	1	1	0	0	0	0	copy fasta	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	t0011	1161	1	1	0	0	0	0	copy fasta	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	t0012	1161	1	0	0	1	0	0	copy fasta	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	t0013	1161	1	0	0	0	0	1	copy fasta	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	t0014	1161	1	0	0	1	0	0	copy fasta	YIPF2	chr19	10917193	10933639