JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
YIPF2_chr19_10917193_10933639	0/0	t0015	1161	1	1	0	0	0	0	copy fasta	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	t0016	1161	1	0	0	0	0	1	copy fasta	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	t0017	1161	1	1	0	0	0	0	copy fasta	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	t0018	1161	1	1	0	0	0	0	copy fasta	YIPF2	chr19	10917193	10933639
YIPF2_chr19_10917193_10933639	0/0	t0019	1161	1	0	1	0	0	0	copy fasta	YIPF2	chr19	10917193	10933639
YIPF3_chr6_43506832_43521926	1/1	t0001	455	331	67	69	140	16	37	copy fasta	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	t0002	455	26	13	3	6	0	4	copy fasta	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	t0003	455	12	12	0	0	0	0	copy fasta	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	t0004	455	7	0	0	7	0	0	copy fasta	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	t0005	455	4	4	0	0	0	0	copy fasta	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	t0006	455	3	3	0	0	0	0	copy fasta	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	t0007	455	1	0	0	1	0	0	copy fasta	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	t0008	455	1	0	0	0	0	1	copy fasta	YIPF3	chr6	43506832	43521926
YIPF3_chr6_43506832_43521926	0/0	t0009	455	1	1	0	0	0	0	copy fasta	YIPF3	chr6	43506832	43521926
YIPF4_chr2_32272904_32321594	0/0	t0001	11220	37	4	4	23	1	5	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0002	11201	21	1	4	12	2	2	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0003	11200	21	0	2	15	1	3	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0004	11202	11	0	0	6	1	4	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0005	11221	10	0	4	6	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0006	11222	8	0	1	7	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0007	11219	7	0	2	5	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0008	11221	7	0	0	6	1	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0009	11223	5	1	1	3	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0010	11228	5	0	0	5	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0011	11227	5	0	0	5	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0012	11226	4	0	3	0	0	1	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0013	11202	4	0	3	1	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0014	11218	4	4	0	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0015	11220	4	4	0	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0016	11222	4	0	1	2	0	1	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0017	11221	4	0	0	3	0	1	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0018	11200	3	3	0	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0019	11200	3	1	2	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0020	11202	3	1	1	0	1	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0021	11223	3	0	0	2	0	1	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0022	11226	3	1	1	0	0	1	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0023	11222	3	0	1	1	0	1	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0024	11225	2	0	1	0	1	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0025	11203	2	0	0	2	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0026	11201	2	0	0	2	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0027	11200	2	0	0	2	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0028	11202	2	0	1	1	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0029	11200	2	2	0	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0030	11200	2	2	0	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0031	11207	2	2	0	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0032	11204	2	2	0	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0033	11200	2	0	0	2	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0034	11224	2	2	0	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0035	11221	2	0	0	2	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0036	11223	2	0	0	2	0	0	copy fasta	YIPF4	chr2	32272904	32321594