JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
YIPF4_chr2_32272904_32321594	0/0	t0037	11221	2	0	0	2	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0038	11222	2	0	0	2	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0039	11225	2	1	1	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0040	11225	2	1	1	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0041	11221	2	2	0	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0042	11219	2	2	0	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0043	11227	2	2	0	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0044	11223	2	2	0	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0045	11227	2	0	1	0	0	1	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0046	11221	2	0	0	2	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0047	11222	2	1	0	0	0	1	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0048	11220	2	0	0	2	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0049	11219	2	0	0	2	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0050	11219	2	0	1	1	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0051	11223	2	0	0	2	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0052	11221	2	0	1	1	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0053	11205	2	2	0	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0054	11226	1	0	0	0	1	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0055	11244	1	0	0	1	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0056	11202	1	0	0	1	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0057	11231	1	0	1	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0058	11230	1	0	1	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0059	11229	1	0	1	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0060	11228	1	0	1	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0061	11227	1	0	1	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0062	11222	1	0	1	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0063	11221	1	0	0	0	0	1	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0064	11224	1	0	0	0	0	1	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0065	11220	1	0	1	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0066	11220	1	0	1	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0067	11202	1	0	1	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0068	11202	1	0	1	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0069	11208	1	1	0	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0070	11203	1	0	0	1	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0071	11202	1	0	0	1	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0072	11201	1	1	0	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0073	11201	1	0	1	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0074	11204	1	0	0	0	0	1	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0075	11204	1	0	1	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0076	11203	1	0	1	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0077	11201	1	0	0	1	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0078	11201	1	0	0	1	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0079	11200	1	0	0	1	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0080	11200	1	0	0	1	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0081	11200	1	0	0	1	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0082	11200	1	0	0	1	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0083	11201	1	0	0	1	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0084	11200	1	0	1	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0085	11203	1	0	1	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0086	7572	1	0	1	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594