JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
YIPF4_chr2_32272904_32321594	0/0	t0187	11221	1	0	0	1	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0188	11220	1	0	0	1	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0189	11220	1	0	0	1	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0190	11228	1	0	1	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0191	11221	1	1	0	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0192	11222	1	0	1	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0193	11220	1	1	0	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0194	11220	1	1	0	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0195	11219	1	1	0	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0196	11221	1	1	0	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0197	11220	1	0	0	1	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0198	11221	1	0	0	1	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0199	11220	1	1	0	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0200	11234	1	1	0	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0201	11235	1	1	0	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0202	11227	1	0	1	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0203	11222	1	1	0	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0204	11207	1	1	0	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0205	11221	1	1	0	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0206	11202	1	0	0	0	1	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0207	11222	1	1	0	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0208	11227	1	1	0	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0209	11222	1	0	1	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0210	11220	1	0	1	0	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0211	11222	1	0	0	1	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF4_chr2_32272904_32321594	0/0	t0212	11220	1	0	0	1	0	0	copy fasta	YIPF4	chr2	32272904	32321594
YIPF5_chr5_144153162_144175659	1/1	t0001	2371	193	20	26	112	8	25	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0002	2373	41	1	6	26	2	6	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0003	2374	41	20	5	12	0	4	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0004	2374	30	4	15	5	2	4	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0005	2374	20	0	0	20	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0006	2374	17	11	1	3	0	2	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0007	2374	15	14	1	0	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0008	2371	6	4	2	0	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0009	2374	5	5	0	0	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0010	2374	4	0	0	4	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0011	2371	4	0	3	0	1	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0012	2372	4	0	2	0	2	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0013	2371	4	4	0	0	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0014	2374	3	3	0	0	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0015	2373	3	0	0	3	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0016	2371	3	0	0	0	3	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0017	2371	3	0	0	3	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0018	2375	3	0	0	3	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0019	2374	2	0	0	2	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0020	2374	2	2	0	0	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0021	2373	2	0	2	0	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0022	2371	2	0	2	0	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0023	2372	2	0	0	2	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0024	2370	2	1	1	0	0	0	copy fasta	YIPF5	chr5	144153162	144175659