JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C1D_chr2_68036130_68068004	0/0	t0018	1826	2	0	2	0	0	0	copy fasta	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	t0019	1820	2	1	1	0	0	0	copy fasta	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	t0020	1821	2	0	0	2	0	0	copy fasta	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	t0021	1820	2	0	0	2	0	0	copy fasta	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	t0022	1819	2	0	0	2	0	0	copy fasta	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	t0023	1816	2	2	0	0	0	0	copy fasta	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	t0024	1822	1	0	1	0	0	0	copy fasta	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	t0025	1818	1	1	0	0	0	0	copy fasta	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	t0026	1810	1	0	0	1	0	0	copy fasta	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	t0027	1831	1	0	1	0	0	0	copy fasta	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	t0028	1829	1	0	0	1	0	0	copy fasta	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	t0029	1827	1	0	0	1	0	0	copy fasta	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	t0030	1772	1	0	0	0	0	1	copy fasta	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	t0031	1822	1	0	0	1	0	0	copy fasta	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	t0032	1821	1	1	0	0	0	0	copy fasta	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	t0033	1821	1	1	0	0	0	0	copy fasta	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	t0034	1818	1	1	0	0	0	0	copy fasta	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	t0035	1820	1	1	0	0	0	0	copy fasta	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	t0036	1819	1	1	0	0	0	0	copy fasta	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	t0037	1819	1	1	0	0	0	0	copy fasta	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	t0038	1816	1	0	0	1	0	0	copy fasta	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	t0039	1810	1	1	0	0	0	0	copy fasta	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	t0040	1810	1	0	1	0	0	0	copy fasta	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	t0041	1806	1	0	0	1	0	0	copy fasta	C1D	chr2	68036130	68068004
C1D_chr2_68036130_68068004	0/0	t0042	1816	1	1	0	0	0	0	copy fasta	C1D	chr2	68036130	68068004
C1GALT1C1L_chr2_43670151_43681429	0/1	t0001	332	185	56	48	35	12	33	copy fasta	C1GALT1C1L	chr2	43670151	43681429
C1GALT1C1L_chr2_43670151_43681429	1/0	t0002	332	176	27	26	107	0	15	copy fasta	C1GALT1C1L	chr2	43670151	43681429
C1GALT1C1L_chr2_43670151_43681429	0/0	t0003	332	26	1	1	22	0	2	copy fasta	C1GALT1C1L	chr2	43670151	43681429
C1GALT1C1L_chr2_43670151_43681429	0/0	t0004	332	6	5	1	0	0	0	copy fasta	C1GALT1C1L	chr2	43670151	43681429
C1GALT1C1L_chr2_43670151_43681429	0/0	t0005	332	2	2	0	0	0	0	copy fasta	C1GALT1C1L	chr2	43670151	43681429
C1GALT1C1L_chr2_43670151_43681429	0/0	t0006	332	1	1	0	0	0	0	copy fasta	C1GALT1C1L	chr2	43670151	43681429
C1GALT1C1_chrX_120620674_120635054	1/1	t0001	680	305	59	45	158	11	30	copy fasta	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	0/0	t0002	680	5	4	1	0	0	0	copy fasta	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	0/0	t0003	680	5	0	2	0	2	1	copy fasta	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	0/0	t0004	680	5	5	0	0	0	0	copy fasta	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	0/0	t0005	676	2	0	0	1	0	1	copy fasta	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	0/0	t0006	681	1	0	0	1	0	0	copy fasta	C1GALT1C1	chrX	120620674	120635054
C1GALT1C1_chrX_120620674_120635054	0/0	t0007	681	1	0	0	1	0	0	copy fasta	C1GALT1C1	chrX	120620674	120635054
C1GALT1_chr7_7177544_7253616	0/0	t0001	5184	64	4	20	32	1	7	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0002	5186	47	0	6	41	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0003	5186	38	3	4	30	1	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0004	5186	37	1	4	32	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	1/0	t0005	5184	32	1	8	7	4	11	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0006	5186	25	2	2	16	1	4	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0007	5184	17	1	10	0	2	4	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0008	5186	12	0	0	11	0	1	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0009	5184	10	8	2	0	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0010	5184	9	9	0	0	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0011	5184	8	6	2	0	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/1	t0012	5184	6	0	3	0	1	1	copy fasta	C1GALT1	chr7	7177544	7253616