JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
YIPF5_chr5_144153162_144175659	0/0	t0025	2371	2	0	0	2	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0026	2373	1	0	0	1	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0027	2374	1	1	0	0	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0028	2374	1	1	0	0	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0029	2373	1	0	1	0	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0030	2371	1	0	0	1	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0031	2371	1	1	0	0	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0032	2374	1	0	0	1	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0033	2371	1	0	1	0	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0034	2371	1	0	1	0	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0035	2371	1	0	0	1	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0036	2371	1	0	0	0	0	1	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0037	2371	1	0	0	0	0	1	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0038	2372	1	0	0	0	0	1	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0039	2371	1	0	0	1	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0040	2371	1	0	1	0	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0041	2374	1	0	0	1	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0042	2375	1	0	0	1	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0043	2374	1	1	0	0	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0044	2374	1	1	0	0	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0045	2374	1	1	0	0	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0046	2371	1	0	0	1	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0047	2373	1	0	0	1	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0048	2374	1	0	1	0	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0049	2373	1	1	0	0	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0050	2374	1	0	1	0	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0051	2371	1	0	0	1	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF5_chr5_144153162_144175659	0/0	t0052	2371	1	0	0	1	0	0	copy fasta	YIPF5	chr5	144153162	144175659
YIPF6_chrX_68494051_68542282	1/1	t0001	5300	97	2	10	63	6	14	copy fasta	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	t0002	5300	45	17	11	14	0	3	copy fasta	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	t0003	5303	11	11	0	0	0	0	copy fasta	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	t0004	5301	11	0	3	8	0	0	copy fasta	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	t0005	5300	10	9	1	0	0	0	copy fasta	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	t0006	5299	8	1	0	7	0	0	copy fasta	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	t0007	5302	4	4	0	0	0	0	copy fasta	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	t0008	5300	4	0	2	0	2	0	copy fasta	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	t0009	5300	3	0	3	0	0	0	copy fasta	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	t0010	5300	3	3	0	0	0	0	copy fasta	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	t0011	5301	2	2	0	0	0	0	copy fasta	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	t0012	5300	2	0	0	0	0	2	copy fasta	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	t0013	5300	2	0	0	2	0	0	copy fasta	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	t0014	5304	1	1	0	0	0	0	copy fasta	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	t0015	5303	1	1	0	0	0	0	copy fasta	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	t0016	5301	1	1	0	0	0	0	copy fasta	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	t0017	5303	1	1	0	0	0	0	copy fasta	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	t0018	5304	1	1	0	0	0	0	copy fasta	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	t0019	5301	1	0	1	0	0	0	copy fasta	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	t0020	5301	1	0	0	1	0	0	copy fasta	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	t0021	5301	1	0	1	0	0	0	copy fasta	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	t0022	5318	1	0	0	1	0	0	copy fasta	YIPF6	chrX	68494051	68542282