JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
YIPF6_chrX_68494051_68542282	0/0	t0023	5300	1	0	1	0	0	0	copy fasta	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	t0024	5300	1	1	0	0	0	0	copy fasta	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	t0025	5299	1	0	1	0	0	0	copy fasta	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	t0026	5300	1	0	1	0	0	0	copy fasta	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	t0027	5296	1	0	0	1	0	0	copy fasta	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	t0028	5300	1	0	0	1	0	0	copy fasta	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	t0029	5299	1	0	1	0	0	0	copy fasta	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	t0030	5300	1	1	0	0	0	0	copy fasta	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	t0031	5300	1	1	0	0	0	0	copy fasta	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	t0032	5300	1	0	0	0	1	0	copy fasta	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	t0033	5296	1	0	0	1	0	0	copy fasta	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	t0034	5300	1	1	0	0	0	0	copy fasta	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	t0035	5302	1	0	0	1	0	0	copy fasta	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	t0036	5300	1	0	0	0	0	1	copy fasta	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	t0037	5300	1	0	1	0	0	0	copy fasta	YIPF6	chrX	68494051	68542282
YIPF6_chrX_68494051_68542282	0/0	t0038	5301	1	0	0	1	0	0	copy fasta	YIPF6	chrX	68494051	68542282
YIPF7_chr4_44617088_44656625	0/1	t0001	399	202	51	29	93	4	24	copy fasta	YIPF7	chr4	44617088	44656625
YIPF7_chr4_44617088_44656625	1/0	t0002	399	157	27	34	69	12	14	copy fasta	YIPF7	chr4	44617088	44656625
YIPF7_chr4_44617088_44656625	0/0	t0003	399	35	0	11	22	0	2	copy fasta	YIPF7	chr4	44617088	44656625
YIPF7_chr4_44617088_44656625	0/0	t0004	399	13	13	0	0	0	0	copy fasta	YIPF7	chr4	44617088	44656625
YIPF7_chr4_44617088_44656625	0/0	t0005	399	2	0	0	2	0	0	copy fasta	YIPF7	chr4	44617088	44656625
YIPF7_chr4_44617088_44656625	0/0	t0006	399	1	1	0	0	0	0	copy fasta	YIPF7	chr4	44617088	44656625
YJEFN3_chr19_19523911_19542581	0/0	t0001	80	187	60	34	58	7	28	copy fasta	YJEFN3	chr19	19523911	19542581
YJEFN3_chr19_19523911_19542581	1/1	t0002	80	153	32	30	60	11	18	copy fasta	YJEFN3	chr19	19523911	19542581
YJU2B_chr19_13742895_13768289	1/1	t0001	483	379	52	76	192	16	41	copy fasta	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	t0002	483	46	45	1	0	0	0	copy fasta	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	t0003	483	2	0	1	1	0	0	copy fasta	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	t0004	446	1	1	0	0	0	0	copy fasta	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	t0005	483	1	0	0	0	0	1	copy fasta	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	t0006	483	1	0	0	1	0	0	copy fasta	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	t0007	483	1	1	0	0	0	0	copy fasta	YJU2B	chr19	13742895	13768289
YJU2B_chr19_13742895_13768289	0/0	t0008	483	1	1	0	0	0	0	copy fasta	YJU2B	chr19	13742895	13768289
YJU2_chr19_4242080_4274088	1/0	t0001	460	378	93	57	173	10	44	copy fasta	YJU2	chr19	4242080	4274088
YJU2_chr19_4242080_4274088	0/0	t0002	460	3	0	3	0	0	0	copy fasta	YJU2	chr19	4242080	4274088
YJU2_chr19_4242080_4274088	0/0	t0003	460	1	0	0	1	0	0	copy fasta	YJU2	chr19	4242080	4274088
YJU2_chr19_4242080_4274088	0/0	t0004	460	1	1	0	0	0	0	copy fasta	YJU2	chr19	4242080	4274088
YJU2_chr19_4242080_4274088	0/1	t0005	460	1	0	0	0	0	0	copy fasta	YJU2	chr19	4242080	4274088
YKT6_chr7_44195978_44219294	1/1	t0001	2171	257	45	39	126	14	31	copy fasta	YKT6	chr7	44195978	44219294
YKT6_chr7_44195978_44219294	0/0	t0002	2169	97	18	26	42	2	9	copy fasta	YKT6	chr7	44195978	44219294
YKT6_chr7_44195978_44219294	0/0	t0003	2170	17	0	4	13	0	0	copy fasta	YKT6	chr7	44195978	44219294
YKT6_chr7_44195978_44219294	0/0	t0004	2171	8	4	4	0	0	0	copy fasta	YKT6	chr7	44195978	44219294
YKT6_chr7_44195978_44219294	0/0	t0005	2169	7	7	0	0	0	0	copy fasta	YKT6	chr7	44195978	44219294
YKT6_chr7_44195978_44219294	0/0	t0006	2169	4	0	0	4	0	0	copy fasta	YKT6	chr7	44195978	44219294
YKT6_chr7_44195978_44219294	0/0	t0007	2171	4	4	0	0	0	0	copy fasta	YKT6	chr7	44195978	44219294
YKT6_chr7_44195978_44219294	0/0	t0008	2171	3	3	0	0	0	0	copy fasta	YKT6	chr7	44195978	44219294
YKT6_chr7_44195978_44219294	0/0	t0009	2169	3	0	3	0	0	0	copy fasta	YKT6	chr7	44195978	44219294
YKT6_chr7_44195978_44219294	0/0	t0010	2171	3	3	0	0	0	0	copy fasta	YKT6	chr7	44195978	44219294
YKT6_chr7_44195978_44219294	0/0	t0011	2169	2	2	0	0	0	0	copy fasta	YKT6	chr7	44195978	44219294
YKT6_chr7_44195978_44219294	0/0	t0012	2169	2	2	0	0	0	0	copy fasta	YKT6	chr7	44195978	44219294
YKT6_chr7_44195978_44219294	0/0	t0013	2171	2	2	0	0	0	0	copy fasta	YKT6	chr7	44195978	44219294