JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
YKT6_chr7_44195978_44219294	0/0	t0014	2190	2	0	0	2	0	0	copy fasta	YKT6	chr7	44195978	44219294
YKT6_chr7_44195978_44219294	0/0	t0015	2171	1	1	0	0	0	0	copy fasta	YKT6	chr7	44195978	44219294
YKT6_chr7_44195978_44219294	0/0	t0016	2171	1	1	0	0	0	0	copy fasta	YKT6	chr7	44195978	44219294
YKT6_chr7_44195978_44219294	0/0	t0017	2171	1	1	0	0	0	0	copy fasta	YKT6	chr7	44195978	44219294
YKT6_chr7_44195978_44219294	0/0	t0018	2170	1	0	0	1	0	0	copy fasta	YKT6	chr7	44195978	44219294
YKT6_chr7_44195978_44219294	0/0	t0019	2171	1	1	0	0	0	0	copy fasta	YKT6	chr7	44195978	44219294
YKT6_chr7_44195978_44219294	0/0	t0020	2170	1	0	0	1	0	0	copy fasta	YKT6	chr7	44195978	44219294
YKT6_chr7_44195978_44219294	0/0	t0021	2170	1	0	0	1	0	0	copy fasta	YKT6	chr7	44195978	44219294
YLPM1_chr14_74758316_74842318	1/1	t0001	1755	320	83	61	140	10	24	copy fasta	YLPM1	chr14	74758316	74842318
YLPM1_chr14_74758316_74842318	0/0	t0002	1755	7	0	0	5	0	2	copy fasta	YLPM1	chr14	74758316	74842318
YLPM1_chr14_74758316_74842318	0/0	t0003	1755	4	4	0	0	0	0	copy fasta	YLPM1	chr14	74758316	74842318
YLPM1_chr14_74758316_74842318	0/0	t0004	1755	1	1	0	0	0	0	copy fasta	YLPM1	chr14	74758316	74842318
YLPM1_chr14_74758316_74842318	0/0	t0005	1755	1	0	0	0	0	1	copy fasta	YLPM1	chr14	74758316	74842318
YLPM1_chr14_74758316_74842318	0/0	t0006	1755	1	0	1	0	0	0	copy fasta	YLPM1	chr14	74758316	74842318
YLPM1_chr14_74758316_74842318	0/0	t0007	1755	1	0	0	1	0	0	copy fasta	YLPM1	chr14	74758316	74842318
YLPM1_chr14_74758316_74842318	0/0	t0008	1755	1	0	0	0	0	1	copy fasta	YLPM1	chr14	74758316	74842318
YME1L1_chr10_27105111_27159384	0/1	t0001	2041	115	11	32	54	3	14	copy fasta	YME1L1	chr10	27105111	27159384
YME1L1_chr10_27105111_27159384	0/0	t0002	2041	65	2	7	48	1	7	copy fasta	YME1L1	chr10	27105111	27159384
YME1L1_chr10_27105111_27159384	0/0	t0003	2041	48	0	0	44	0	4	copy fasta	YME1L1	chr10	27105111	27159384
YME1L1_chr10_27105111_27159384	0/0	t0004	2041	46	17	1	28	0	0	copy fasta	YME1L1	chr10	27105111	27159384
YME1L1_chr10_27105111_27159384	1/0	t0005	2041	43	11	20	5	2	4	copy fasta	YME1L1	chr10	27105111	27159384
YME1L1_chr10_27105111_27159384	0/0	t0006	2041	19	16	3	0	0	0	copy fasta	YME1L1	chr10	27105111	27159384
YME1L1_chr10_27105111_27159384	0/0	t0007	2041	12	10	2	0	0	0	copy fasta	YME1L1	chr10	27105111	27159384
YME1L1_chr10_27105111_27159384	0/0	t0008	2041	10	4	2	0	2	2	copy fasta	YME1L1	chr10	27105111	27159384
YME1L1_chr10_27105111_27159384	0/0	t0009	2041	7	5	1	0	0	1	copy fasta	YME1L1	chr10	27105111	27159384
YME1L1_chr10_27105111_27159384	0/0	t0010	2041	5	0	4	0	1	0	copy fasta	YME1L1	chr10	27105111	27159384
YME1L1_chr10_27105111_27159384	0/0	t0011	2041	4	0	4	0	0	0	copy fasta	YME1L1	chr10	27105111	27159384
YME1L1_chr10_27105111_27159384	0/0	t0012	2041	4	4	0	0	0	0	copy fasta	YME1L1	chr10	27105111	27159384
YME1L1_chr10_27105111_27159384	0/0	t0013	2041	2	0	0	0	2	0	copy fasta	YME1L1	chr10	27105111	27159384
YME1L1_chr10_27105111_27159384	0/0	t0014	2041	2	2	0	0	0	0	copy fasta	YME1L1	chr10	27105111	27159384
YME1L1_chr10_27105111_27159384	0/0	t0015	2041	1	1	0	0	0	0	copy fasta	YME1L1	chr10	27105111	27159384
YME1L1_chr10_27105111_27159384	0/0	t0016	2041	1	1	0	0	0	0	copy fasta	YME1L1	chr10	27105111	27159384
YME1L1_chr10_27105111_27159384	0/0	t0017	2041	1	0	0	1	0	0	copy fasta	YME1L1	chr10	27105111	27159384
YME1L1_chr10_27105111_27159384	0/0	t0018	2041	1	1	0	0	0	0	copy fasta	YME1L1	chr10	27105111	27159384
YME1L1_chr10_27105111_27159384	0/0	t0019	2041	1	0	0	0	1	0	copy fasta	YME1L1	chr10	27105111	27159384
YME1L1_chr10_27105111_27159384	0/0	t0020	2041	1	1	0	0	0	0	copy fasta	YME1L1	chr10	27105111	27159384
YOD1_chr1_207038849_207056208	0/1	t0001	5350	142	10	23	87	4	17	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	t0002	5350	66	16	19	15	6	10	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	t0003	5350	34	7	7	12	5	3	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	t0004	5350	19	0	6	13	0	0	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	t0005	5350	17	0	9	8	0	0	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	t0006	5346	12	11	1	0	0	0	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	t0007	5350	12	9	3	0	0	0	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	t0008	5349	9	9	0	0	0	0	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	t0009	5350	8	0	0	8	0	0	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	t0010	5350	8	7	1	0	0	0	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	t0011	5350	6	6	0	0	0	0	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	t0012	5350	6	6	0	0	0	0	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	t0013	5351	5	5	0	0	0	0	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	1/0	t0014	5350	5	0	2	0	1	1	copy fasta	YOD1	chr1	207038849	207056208