JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
YOD1_chr1_207038849_207056208	0/0	t0015	5350	5	0	1	4	0	0	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	t0016	5350	4	0	0	4	0	0	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	t0017	5350	4	4	0	0	0	0	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	t0018	5350	3	0	1	0	1	1	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	t0019	5350	3	0	0	3	0	0	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	t0020	5350	2	0	0	2	0	0	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	t0021	5350	2	0	0	2	0	0	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	t0022	5351	2	0	0	2	0	0	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	t0023	5351	2	1	0	1	0	0	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	t0024	5350	1	0	1	0	0	0	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	t0025	5351	1	0	0	0	0	1	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	t0026	5351	1	0	0	1	0	0	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	t0027	5350	1	1	0	0	0	0	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	t0028	5350	1	0	0	1	0	0	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	t0029	5350	1	0	0	0	0	1	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	t0030	5350	1	0	0	0	0	1	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	t0031	5350	1	0	1	0	0	0	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	t0032	5350	1	0	1	0	0	0	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	t0033	5350	1	0	0	0	1	0	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	t0034	5350	1	0	1	0	0	0	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	t0035	5350	1	1	0	0	0	0	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	t0036	5351	1	1	0	0	0	0	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	t0037	5350	1	0	0	1	0	0	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	t0038	5350	1	1	0	0	0	0	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	t0039	5351	1	1	0	0	0	0	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	t0040	5351	1	0	1	0	0	0	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	t0041	5349	1	1	0	0	0	0	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	t0042	5350	1	0	0	1	0	0	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	t0043	5350	1	0	0	1	0	0	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	t0044	5350	1	0	0	1	0	0	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	t0045	5350	1	1	0	0	0	0	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	t0046	5351	1	1	0	0	0	0	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	t0047	5350	1	0	0	0	0	1	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	t0048	5349	1	0	0	1	0	0	copy fasta	YOD1	chr1	207038849	207056208
YOD1_chr1_207038849_207056208	0/0	t0049	5350	1	1	0	0	0	0	copy fasta	YOD1	chr1	207038849	207056208
YPEL1_chr22_21692536_21740794	0/0	t0001	3940	85	6	20	47	3	9	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0002	3939	67	18	6	34	1	8	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0003	3942	44	9	19	4	5	7	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	1/0	t0004	3938	42	0	2	36	0	3	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0005	3938	22	6	10	0	1	5	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0006	3940	12	9	3	0	0	0	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0007	3938	10	0	0	10	0	0	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0008	3941	9	9	0	0	0	0	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0009	3943	8	7	1	0	0	0	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0010	3941	7	0	2	4	0	1	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0011	3940	5	1	0	4	0	0	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0012	3943	5	2	0	0	0	3	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0013	3943	5	5	0	0	0	0	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0014	3942	4	0	0	4	0	0	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0015	3938	3	3	0	0	0	0	copy fasta	YPEL1	chr22	21692536	21740794