JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
YPEL1_chr22_21692536_21740794	0/0	t0016	3938	3	0	0	3	0	0	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0017	3944	2	0	0	0	1	1	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0018	3938	2	0	1	0	1	0	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0019	3938	2	2	0	0	0	0	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0020	3943	2	2	0	0	0	0	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0021	3939	2	0	0	2	0	0	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0022	3938	2	0	0	2	0	0	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0023	3927	1	1	0	0	0	0	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0024	3938	1	0	0	1	0	0	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0025	3939	1	0	0	1	0	0	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0026	3940	1	0	0	1	0	0	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0027	3940	1	1	0	0	0	0	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0028	3940	1	0	0	1	0	0	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0029	3938	1	0	1	0	0	0	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0030	3939	1	0	1	0	0	0	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0031	3940	1	0	0	1	0	0	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0032	3940	1	1	0	0	0	0	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0033	3939	1	0	0	1	0	0	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0034	3942	1	1	0	0	0	0	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0035	3942	1	1	0	0	0	0	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0036	3944	1	1	0	0	0	0	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0037	3942	1	1	0	0	0	0	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0038	3927	1	1	0	0	0	0	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0039	3942	1	1	0	0	0	0	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0040	3942	1	1	0	0	0	0	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/1	t0041	3941	1	0	0	0	0	0	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0042	3940	1	1	0	0	0	0	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0043	3937	1	0	0	1	0	0	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0044	3938	1	0	0	1	0	0	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0045	3942	1	0	0	1	0	0	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0046	3943	1	0	0	1	0	0	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0047	3942	1	0	0	0	0	1	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0048	3942	1	0	0	1	0	0	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0049	3942	1	1	0	0	0	0	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0050	3939	1	0	0	1	0	0	copy fasta	YPEL1	chr22	21692536	21740794
YPEL1_chr22_21692536_21740794	0/0	t0051	3939	1	1	0	0	0	0	copy fasta	YPEL1	chr22	21692536	21740794
YPEL2_chr17_59326655_59406729	1/0	t0001	4905	76	3	22	32	4	14	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0002	4904	55	1	7	41	1	5	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/1	t0003	4904	30	8	11	8	1	1	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0004	4904	24	3	9	8	1	3	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0005	4904	17	2	1	10	0	4	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0006	4904	12	9	2	1	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0007	4904	10	0	0	10	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0008	4904	10	9	1	0	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0009	4904	9	0	0	9	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0010	4904	8	8	0	0	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0011	4904	7	3	1	0	0	3	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0012	4904	6	5	1	0	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0013	4902	5	4	1	0	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0014	4904	5	0	0	5	0	0	copy fasta	YPEL2	chr17	59326655	59406729