JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
YPEL2_chr17_59326655_59406729	0/0	t0015	4903	4	0	0	4	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0016	4904	4	4	0	0	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0017	4916	3	0	0	0	1	2	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0018	4904	3	0	0	3	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0019	4904	3	2	1	0	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0020	4904	3	1	2	0	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0021	4904	2	0	2	0	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0022	4904	2	0	0	2	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0023	4905	2	2	0	0	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0024	4904	2	1	0	0	0	1	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0025	4904	2	0	0	2	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0026	4904	2	0	0	0	0	2	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0027	4904	2	2	0	0	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0028	4904	2	2	0	0	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0029	4904	2	0	0	2	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0030	4904	1	1	0	0	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0031	4904	1	0	0	0	1	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0032	4904	1	1	0	0	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0033	4900	1	0	0	1	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0034	4904	1	0	0	1	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0035	4904	1	0	1	0	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0036	4904	1	0	0	1	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0037	4904	1	1	0	0	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0038	4904	1	1	0	0	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0039	4905	1	0	0	1	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0040	4904	1	1	0	0	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0041	4904	1	1	0	0	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0042	4904	1	0	0	0	0	1	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0043	4904	1	0	0	1	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0044	4904	1	1	0	0	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0045	4904	1	1	0	0	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0046	4904	1	1	0	0	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0047	4904	1	1	0	0	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0048	4932	1	0	0	0	0	1	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0049	4905	1	1	0	0	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0050	4905	1	1	0	0	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0051	4905	1	0	0	1	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0052	4904	1	1	0	0	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0053	4904	1	1	0	0	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0054	4905	1	0	0	1	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0055	4904	1	0	0	0	1	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0056	4904	1	0	0	1	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0057	4904	1	0	0	0	0	1	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0058	4904	1	0	0	1	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0059	4904	1	0	1	0	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0060	4905	1	0	1	0	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0061	4904	1	1	0	0	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0062	4902	1	1	0	0	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0063	4904	1	1	0	0	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0064	4904	1	1	0	0	0	0	copy fasta	YPEL2	chr17	59326655	59406729