JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
YPEL2_chr17_59326655_59406729	0/0	t0065	4904	1	1	0	0	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0066	4904	1	1	0	0	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL2_chr17_59326655_59406729	0/0	t0067	4904	1	1	0	0	0	0	copy fasta	YPEL2	chr17	59326655	59406729
YPEL3_chr16_30087314_30101213	1/0	t0001	1128	202	28	49	99	2	23	copy fasta	YPEL3	chr16	30087314	30101213
YPEL3_chr16_30087314_30101213	0/1	t0002	1128	162	50	18	63	8	22	copy fasta	YPEL3	chr16	30087314	30101213
YPEL3_chr16_30087314_30101213	0/0	t0003	1128	3	0	0	3	0	0	copy fasta	YPEL3	chr16	30087314	30101213
YPEL3_chr16_30087314_30101213	0/0	t0004	1128	1	1	0	0	0	0	copy fasta	YPEL3	chr16	30087314	30101213
YPEL3_chr16_30087314_30101213	0/0	t0005	1128	1	0	0	1	0	0	copy fasta	YPEL3	chr16	30087314	30101213
YPEL3_chr16_30087314_30101213	0/0	t0006	1128	1	0	1	0	0	0	copy fasta	YPEL3	chr16	30087314	30101213
YPEL3_chr16_30087314_30101213	0/0	t0007	1128	1	0	1	0	0	0	copy fasta	YPEL3	chr16	30087314	30101213
YPEL3_chr16_30087314_30101213	0/0	t0008	1128	1	0	0	0	0	1	copy fasta	YPEL3	chr16	30087314	30101213
YPEL3_chr16_30087314_30101213	0/0	t0009	1128	1	0	1	0	0	0	copy fasta	YPEL3	chr16	30087314	30101213
YPEL3_chr16_30087314_30101213	0/0	t0010	1128	1	0	0	1	0	0	copy fasta	YPEL3	chr16	30087314	30101213
YPEL3_chr16_30087314_30101213	0/0	t0011	1128	1	1	0	0	0	0	copy fasta	YPEL3	chr16	30087314	30101213
YPEL3_chr16_30087314_30101213	0/0	t0012	1128	1	0	0	1	0	0	copy fasta	YPEL3	chr16	30087314	30101213
YPEL3_chr16_30087314_30101213	0/0	t0013	1128	1	0	0	1	0	0	copy fasta	YPEL3	chr16	30087314	30101213
YPEL3_chr16_30087314_30101213	0/0	t0014	1128	1	0	0	1	0	0	copy fasta	YPEL3	chr16	30087314	30101213
YPEL4_chr11_57640087_57654912	0/0	t0000	0	1	0	0	0	0	1	copy fasta	YPEL4	chr11	57640087	57654912
YPEL4_chr11_57640087_57654912	1/1	t0001	1307	310	82	70	103	14	39	copy fasta	YPEL4	chr11	57640087	57654912
YPEL4_chr11_57640087_57654912	0/0	t0002	1307	7	7	0	0	0	0	copy fasta	YPEL4	chr11	57640087	57654912
YPEL4_chr11_57640087_57654912	0/0	t0003	1307	5	5	0	0	0	0	copy fasta	YPEL4	chr11	57640087	57654912
YPEL4_chr11_57640087_57654912	0/0	t0004	1307	1	0	0	1	0	0	copy fasta	YPEL4	chr11	57640087	57654912
YPEL4_chr11_57640087_57654912	0/0	t0005	1307	1	0	0	1	0	0	copy fasta	YPEL4	chr11	57640087	57654912
YPEL4_chr11_57640087_57654912	0/0	t0006	1307	1	0	0	1	0	0	copy fasta	YPEL4	chr11	57640087	57654912
YPEL4_chr11_57640087_57654912	0/0	t0007	1307	1	1	0	0	0	0	copy fasta	YPEL4	chr11	57640087	57654912
YPEL4_chr11_57640087_57654912	0/0	t0008	1307	1	1	0	0	0	0	copy fasta	YPEL4	chr11	57640087	57654912
YPEL5_chr2_30142007_30165533	1/1	t0001	1771	170	66	31	38	12	21	copy fasta	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	t0002	1771	131	17	8	96	0	10	copy fasta	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	t0003	1771	81	1	22	46	2	10	copy fasta	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	t0004	1771	6	0	3	2	0	1	copy fasta	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	t0005	1771	6	6	0	0	0	0	copy fasta	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	t0006	1771	2	0	0	2	0	0	copy fasta	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	t0007	1771	2	0	1	0	0	1	copy fasta	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	t0008	1771	1	0	0	1	0	0	copy fasta	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	t0009	1771	1	0	1	0	0	0	copy fasta	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	t0010	1771	1	0	0	1	0	0	copy fasta	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	t0011	1771	1	1	0	0	0	0	copy fasta	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	t0012	1771	1	1	0	0	0	0	copy fasta	YPEL5	chr2	30142007	30165533
YPEL5_chr2_30142007_30165533	0/0	t0013	1771	1	0	0	0	0	1	copy fasta	YPEL5	chr2	30142007	30165533
YRDC_chr1_37797945_37813208	1/1	t0001	1009	195	59	25	86	5	18	copy fasta	YRDC	chr1	37797945	37813208
YRDC_chr1_37797945_37813208	0/0	t0002	1009	106	12	19	59	6	10	copy fasta	YRDC	chr1	37797945	37813208
YRDC_chr1_37797945_37813208	0/0	t0003	1009	89	1	24	54	3	7	copy fasta	YRDC	chr1	37797945	37813208
YRDC_chr1_37797945_37813208	0/0	t0004	1009	13	0	6	0	0	7	copy fasta	YRDC	chr1	37797945	37813208
YRDC_chr1_37797945_37813208	0/0	t0005	1006	8	8	0	0	0	0	copy fasta	YRDC	chr1	37797945	37813208
YRDC_chr1_37797945_37813208	0/0	t0006	1009	2	2	0	0	0	0	copy fasta	YRDC	chr1	37797945	37813208
YRDC_chr1_37797945_37813208	0/0	t0007	1009	2	2	0	0	0	0	copy fasta	YRDC	chr1	37797945	37813208
YRDC_chr1_37797945_37813208	0/0	t0008	1009	1	0	0	1	0	0	copy fasta	YRDC	chr1	37797945	37813208
YTHDC1_chr4_68305387_68355090	0/1	t0001	4050	107	6	21	59	4	16	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	t0002	4050	79	8	7	53	6	5	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	t0003	4050	57	18	25	7	2	5	copy fasta	YTHDC1	chr4	68305387	68355090