JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
YTHDC1_chr4_68305387_68355090	0/0	t0004	4050	41	0	3	37	0	1	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	t0005	4050	33	4	7	14	2	6	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	t0006	4050	10	9	1	0	0	0	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	t0007	4050	7	6	1	0	0	0	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	t0008	4048	6	6	0	0	0	0	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	t0009	4050	4	4	0	0	0	0	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	t0010	4050	4	4	0	0	0	0	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	t0011	4050	3	3	0	0	0	0	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	t0012	4050	3	3	0	0	0	0	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	t0013	4050	3	3	0	0	0	0	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	t0014	4048	3	2	0	0	1	0	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	t0015	4050	2	2	0	0	0	0	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	t0016	4050	2	0	0	2	0	0	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	t0017	4050	1	0	1	0	0	0	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	t0018	4050	1	1	0	0	0	0	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	t0019	4050	1	1	0	0	0	0	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	t0020	4050	1	0	0	1	0	0	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	t0021	4050	1	1	0	0	0	0	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	t0022	4050	1	0	0	1	0	0	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	t0023	4050	1	1	0	0	0	0	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	t0024	4050	1	0	0	0	0	1	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	t0025	4050	1	0	0	1	0	0	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	t0026	4050	1	0	0	0	0	1	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	t0027	4050	1	0	0	0	1	0	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	t0028	4050	1	1	0	0	0	0	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	t0029	4050	1	0	0	0	0	1	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	t0030	4050	1	0	0	1	0	0	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	t0031	4050	1	0	1	0	0	0	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	t0032	4050	1	1	0	0	0	0	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	t0033	4050	1	0	0	1	0	0	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	t0034	4050	1	1	0	0	0	0	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	t0035	4050	1	0	0	1	0	0	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	t0036	4050	1	1	0	0	0	0	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	t0037	4050	1	0	0	0	0	1	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	t0038	4050	1	0	1	0	0	0	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC1_chr4_68305387_68355090	0/0	t0039	4050	1	0	0	0	0	1	copy fasta	YTHDC1	chr4	68305387	68355090
YTHDC2_chr5_113508694_113600284	0/0	t0001	2013	117	2	24	62	9	20	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/1	t0002	2013	63	16	11	25	3	7	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	t0003	2013	63	17	19	22	1	4	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	t0004	2013	32	23	6	2	1	0	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	t0005	2010	12	0	0	11	0	1	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	t0006	2013	6	6	0	0	0	0	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	t0007	2013	5	3	2	0	0	0	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	t0008	2013	4	4	0	0	0	0	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	1/0	t0009	2013	4	0	0	3	0	0	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	t0010	2013	2	0	0	2	0	0	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	t0011	2013	2	2	0	0	0	0	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	t0012	2013	1	1	0	0	0	0	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	t0013	2013	1	0	0	1	0	0	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	t0014	2013	1	1	0	0	0	0	copy fasta	YTHDC2	chr5	113508694	113600284