JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
YTHDC2_chr5_113508694_113600284	0/0	t0015	2013	1	0	0	1	0	0	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	t0016	2013	1	1	0	0	0	0	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDC2_chr5_113508694_113600284	0/0	t0017	2013	1	0	0	1	0	0	copy fasta	YTHDC2	chr5	113508694	113600284
YTHDF1_chr20_63190429_63221131	1/1	t0001	1519	315	69	53	133	17	41	copy fasta	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	t0002	1518	10	1	2	3	1	3	copy fasta	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	t0003	1519	10	8	2	0	0	0	copy fasta	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	t0004	1520	6	1	0	5	0	0	copy fasta	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	t0005	1519	5	4	1	0	0	0	copy fasta	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	t0006	1519	5	0	0	5	0	0	copy fasta	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	t0007	1540	5	0	0	5	0	0	copy fasta	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	t0008	1520	4	4	0	0	0	0	copy fasta	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	t0009	1519	3	0	0	3	0	0	copy fasta	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	t0010	1519	3	3	0	0	0	0	copy fasta	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	t0011	1519	1	0	1	0	0	0	copy fasta	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	t0012	1579	1	0	0	1	0	0	copy fasta	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	t0013	1519	1	0	0	0	0	1	copy fasta	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	t0014	1519	1	1	0	0	0	0	copy fasta	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	t0015	1519	1	0	0	1	0	0	copy fasta	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	t0016	1519	1	0	0	0	0	1	copy fasta	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	t0017	1519	1	0	0	0	0	1	copy fasta	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	t0018	1519	1	1	0	0	0	0	copy fasta	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	t0019	1519	1	0	0	1	0	0	copy fasta	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	t0020	1519	1	0	0	0	0	1	copy fasta	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	t0021	1519	1	0	1	0	0	0	copy fasta	YTHDF1	chr20	63190429	63221131
YTHDF1_chr20_63190429_63221131	0/0	t0022	1519	1	0	0	1	0	0	copy fasta	YTHDF1	chr20	63190429	63221131
YTHDF2_chr1_28731940_28774775	0/1	t0001	1005	272	77	67	87	12	28	copy fasta	YTHDF2	chr1	28731940	28774775
YTHDF2_chr1_28731940_28774775	1/0	t0002	1005	18	15	2	0	0	0	copy fasta	YTHDF2	chr1	28731940	28774775
YTHDF2_chr1_28731940_28774775	0/0	t0003	1005	1	0	1	0	0	0	copy fasta	YTHDF2	chr1	28731940	28774775
YTHDF2_chr1_28731940_28774775	0/0	t0004	1005	1	0	0	1	0	0	copy fasta	YTHDF2	chr1	28731940	28774775
YTHDF3_chr8_63163621_63217786	1/1	t0001	3338	134	27	32	43	7	23	copy fasta	YTHDF3	chr8	63163621	63217786
YTHDF3_chr8_63163621_63217786	0/0	t0002	3338	109	24	19	62	1	3	copy fasta	YTHDF3	chr8	63163621	63217786
YTHDF3_chr8_63163621_63217786	0/0	t0003	3337	97	17	12	62	1	5	copy fasta	YTHDF3	chr8	63163621	63217786
YTHDF3_chr8_63163621_63217786	0/0	t0004	3338	6	6	0	0	0	0	copy fasta	YTHDF3	chr8	63163621	63217786
YTHDF3_chr8_63163621_63217786	0/0	t0005	3337	5	2	0	3	0	0	copy fasta	YTHDF3	chr8	63163621	63217786
YTHDF3_chr8_63163621_63217786	0/0	t0006	3338	3	0	0	3	0	0	copy fasta	YTHDF3	chr8	63163621	63217786
YTHDF3_chr8_63163621_63217786	0/0	t0007	3338	2	2	0	0	0	0	copy fasta	YTHDF3	chr8	63163621	63217786
YTHDF3_chr8_63163621_63217786	0/0	t0008	3337	2	0	0	0	2	0	copy fasta	YTHDF3	chr8	63163621	63217786
YTHDF3_chr8_63163621_63217786	0/0	t0009	3338	1	0	1	0	0	0	copy fasta	YTHDF3	chr8	63163621	63217786
YTHDF3_chr8_63163621_63217786	0/0	t0010	3338	1	1	0	0	0	0	copy fasta	YTHDF3	chr8	63163621	63217786
YTHDF3_chr8_63163621_63217786	0/0	t0011	3338	1	1	0	0	0	0	copy fasta	YTHDF3	chr8	63163621	63217786
YTHDF3_chr8_63163621_63217786	0/0	t0012	3338	1	0	0	0	0	1	copy fasta	YTHDF3	chr8	63163621	63217786
YTHDF3_chr8_63163621_63217786	0/0	t0013	3338	1	0	0	1	0	0	copy fasta	YTHDF3	chr8	63163621	63217786
YTHDF3_chr8_63163621_63217786	0/0	t0014	3338	1	0	1	0	0	0	copy fasta	YTHDF3	chr8	63163621	63217786
YTHDF3_chr8_63163621_63217786	0/0	t0015	3337	1	1	0	0	0	0	copy fasta	YTHDF3	chr8	63163621	63217786
YTHDF3_chr8_63163621_63217786	0/0	t0016	3338	1	0	0	0	0	1	copy fasta	YTHDF3	chr8	63163621	63217786
YTHDF3_chr8_63163621_63217786	0/0	t0017	3338	1	0	1	0	0	0	copy fasta	YTHDF3	chr8	63163621	63217786
YTHDF3_chr8_63163621_63217786	0/0	t0018	3338	1	0	0	0	1	0	copy fasta	YTHDF3	chr8	63163621	63217786
YTHDF3_chr8_63163621_63217786	0/0	t0019	3338	1	0	0	1	0	0	copy fasta	YTHDF3	chr8	63163621	63217786
YTHDF3_chr8_63163621_63217786	0/0	t0020	3326	1	1	0	0	0	0	copy fasta	YTHDF3	chr8	63163621	63217786
YTHDF3_chr8_63163621_63217786	0/0	t0021	3338	1	1	0	0	0	0	copy fasta	YTHDF3	chr8	63163621	63217786