JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
YTHDF3_chr8_63163621_63217786	0/0	t0022	3338	1	0	0	0	0	1	copy fasta	YTHDF3	chr8	63163621	63217786
YTHDF3_chr8_63163621_63217786	0/0	t0023	3338	1	1	0	0	0	0	copy fasta	YTHDF3	chr8	63163621	63217786
YTHDF3_chr8_63163621_63217786	0/0	t0024	3338	1	0	0	1	0	0	copy fasta	YTHDF3	chr8	63163621	63217786
YWHAB_chr20_44880705_44913532	1/1	t0001	2280	211	33	45	100	8	23	copy fasta	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	t0002	2279	35	8	3	22	0	2	copy fasta	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	t0003	2281	16	7	0	9	0	0	copy fasta	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	t0004	2279	13	0	5	0	2	6	copy fasta	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	t0005	2279	12	2	5	4	0	1	copy fasta	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	t0006	2281	9	0	5	3	0	1	copy fasta	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	t0007	2279	7	1	2	0	4	0	copy fasta	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	t0008	2276	7	0	7	0	0	0	copy fasta	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	t0009	2285	6	5	1	0	0	0	copy fasta	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	t0010	2286	5	5	0	0	0	0	copy fasta	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	t0011	2284	4	4	0	0	0	0	copy fasta	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	t0012	2279	3	3	0	0	0	0	copy fasta	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	t0013	2278	3	3	0	0	0	0	copy fasta	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	t0014	2278	3	3	0	0	0	0	copy fasta	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	t0015	2280	2	0	1	0	1	0	copy fasta	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	t0016	2286	2	0	0	2	0	0	copy fasta	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	t0017	2288	2	2	0	0	0	0	copy fasta	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	t0018	2281	2	0	0	0	0	2	copy fasta	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	t0019	2280	2	2	0	0	0	0	copy fasta	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	t0020	2283	1	0	0	0	0	1	copy fasta	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	t0021	2287	1	1	0	0	0	0	copy fasta	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	t0022	2285	1	0	0	0	0	1	copy fasta	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	t0023	2283	1	1	0	0	0	0	copy fasta	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	t0024	2282	1	1	0	0	0	0	copy fasta	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	t0025	2282	1	0	1	0	0	0	copy fasta	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	t0026	2279	1	0	0	1	0	0	copy fasta	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	t0027	2280	1	0	0	0	0	1	copy fasta	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	t0028	2279	1	0	0	1	0	0	copy fasta	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	t0029	2279	1	1	0	0	0	0	copy fasta	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	t0030	2279	1	1	0	0	0	0	copy fasta	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	t0031	2282	1	0	0	1	0	0	copy fasta	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	t0032	2280	1	0	0	0	1	0	copy fasta	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	t0033	2280	1	0	0	1	0	0	copy fasta	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	t0034	2280	1	0	1	0	0	0	copy fasta	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	t0035	2278	1	0	0	1	0	0	copy fasta	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	t0036	2275	1	0	1	0	0	0	copy fasta	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	t0037	2280	1	0	1	0	0	0	copy fasta	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	t0038	2280	1	0	0	1	0	0	copy fasta	YWHAB	chr20	44880705	44913532
YWHAB_chr20_44880705_44913532	0/0	t0039	2284	1	1	0	0	0	0	copy fasta	YWHAB	chr20	44880705	44913532
YWHAE_chr17_1339275_1405222	0/1	t0001	1285	158	45	24	54	9	25	copy fasta	YWHAE	chr17	1339275	1405222
YWHAE_chr17_1339275_1405222	0/0	t0002	1287	76	13	25	26	4	8	copy fasta	YWHAE	chr17	1339275	1405222
YWHAE_chr17_1339275_1405222	0/0	t0003	1285	72	11	15	43	1	2	copy fasta	YWHAE	chr17	1339275	1405222
YWHAE_chr17_1339275_1405222	0/0	t0004	1286	18	7	2	5	1	3	copy fasta	YWHAE	chr17	1339275	1405222
YWHAE_chr17_1339275_1405222	0/0	t0005	1286	9	7	1	0	0	1	copy fasta	YWHAE	chr17	1339275	1405222
YWHAE_chr17_1339275_1405222	0/0	t0006	1284	8	4	2	2	0	0	copy fasta	YWHAE	chr17	1339275	1405222
YWHAE_chr17_1339275_1405222	0/0	t0007	1283	8	0	4	0	1	3	copy fasta	YWHAE	chr17	1339275	1405222
YWHAE_chr17_1339275_1405222	0/0	t0008	1285	7	0	0	7	0	0	copy fasta	YWHAE	chr17	1339275	1405222