JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C1GALT1_chr7_7177544_7253616	0/0	t0013	5184	5	4	1	0	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0014	5184	4	4	0	0	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0015	5186	4	4	0	0	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0016	5186	4	4	0	0	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0017	5184	4	4	0	0	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0018	5184	3	3	0	0	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0019	5184	3	3	0	0	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0020	5184	3	1	0	0	0	2	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0021	5184	3	0	1	0	2	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0022	5186	3	3	0	0	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0023	5190	3	3	0	0	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0024	5184	2	2	0	0	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0025	5186	2	0	0	2	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0026	5186	2	2	0	0	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0027	5184	2	2	0	0	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0028	5186	2	2	0	0	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0029	5186	1	0	0	1	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0030	5186	1	1	0	0	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0031	5184	1	0	0	1	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0032	5184	1	0	0	0	0	1	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0033	5184	1	0	1	0	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0034	5186	1	0	0	1	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0035	5184	1	0	1	0	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0036	5184	1	1	0	0	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0037	5186	1	0	0	1	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0038	5184	1	1	0	0	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0039	5184	1	1	0	0	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0040	5184	1	1	0	0	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0041	5184	1	1	0	0	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0042	5184	1	0	0	1	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0043	5184	1	0	0	1	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0044	5184	1	1	0	0	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0045	5184	1	1	0	0	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0046	5184	1	1	0	0	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0047	5186	1	0	0	0	0	1	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0048	5186	1	0	0	1	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0049	5186	1	1	0	0	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0050	5186	1	1	0	0	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0051	5186	1	0	0	1	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0052	5186	1	0	0	1	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0053	5184	1	1	0	0	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0054	5184	1	1	0	0	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0055	5138	1	0	0	1	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0056	5184	1	0	0	1	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0057	5186	1	1	0	0	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0058	5184	1	1	0	0	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0059	5186	1	1	0	0	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0060	5186	1	0	0	1	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0061	5184	1	1	0	0	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0062	5184	1	0	0	1	0	0	copy fasta	C1GALT1	chr7	7177544	7253616