JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
YWHAE_chr17_1339275_1405222	0/0	t0009	1285	4	3	1	0	0	0	copy fasta	YWHAE	chr17	1339275	1405222
YWHAE_chr17_1339275_1405222	0/0	t0010	1284	2	2	0	0	0	0	copy fasta	YWHAE	chr17	1339275	1405222
YWHAE_chr17_1339275_1405222	0/0	t0011	1285	2	2	0	0	0	0	copy fasta	YWHAE	chr17	1339275	1405222
YWHAE_chr17_1339275_1405222	0/0	t0012	1285	2	0	0	2	0	0	copy fasta	YWHAE	chr17	1339275	1405222
YWHAE_chr17_1339275_1405222	0/0	t0013	1286	1	0	0	1	0	0	copy fasta	YWHAE	chr17	1339275	1405222
YWHAE_chr17_1339275_1405222	0/0	t0014	1284	1	0	0	1	0	0	copy fasta	YWHAE	chr17	1339275	1405222
YWHAE_chr17_1339275_1405222	0/0	t0015	1285	1	0	0	0	0	1	copy fasta	YWHAE	chr17	1339275	1405222
YWHAE_chr17_1339275_1405222	0/0	t0016	1285	1	0	1	0	0	0	copy fasta	YWHAE	chr17	1339275	1405222
YWHAE_chr17_1339275_1405222	0/0	t0017	1284	1	0	0	0	0	1	copy fasta	YWHAE	chr17	1339275	1405222
YWHAE_chr17_1339275_1405222	0/0	t0018	1286	1	0	0	1	0	0	copy fasta	YWHAE	chr17	1339275	1405222
YWHAE_chr17_1339275_1405222	0/0	t0019	1287	1	0	1	0	0	0	copy fasta	YWHAE	chr17	1339275	1405222
YWHAG_chr7_76321799_76363991	0/0	t0001	2980	55	0	15	35	1	4	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0002	2984	49	7	6	29	3	4	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0003	2983	26	8	4	5	4	5	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0004	2985	22	4	1	14	0	3	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/1	t0005	2984	17	1	9	1	0	5	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0006	2981	14	0	1	10	0	3	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0007	2982	13	1	5	5	1	1	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0008	2983	13	7	1	3	0	2	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0009	2981	12	1	2	8	0	1	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0010	2982	12	4	0	5	2	1	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0011	2980	9	0	0	8	1	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0012	2986	9	1	2	5	0	1	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0013	2984	8	1	1	6	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0014	2982	7	0	1	6	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0015	2983	6	6	0	0	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0016	2979	6	1	1	4	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0017	2986	5	0	0	5	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0018	2978	5	4	1	0	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0019	2980	5	5	0	0	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0020	2983	4	0	1	3	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0021	2981	4	2	2	0	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0022	2985	4	2	1	0	0	1	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0023	2986	4	0	2	0	0	2	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0024	2983	4	0	0	4	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0025	2981	3	3	0	0	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0026	2983	3	3	0	0	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0027	2982	3	3	0	0	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0028	2981	2	1	1	0	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0029	2982	2	2	0	0	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0030	2985	2	1	1	0	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0031	2984	2	1	1	0	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0032	2983	2	2	0	0	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0033	2985	2	0	0	2	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0034	2987	2	0	1	0	0	1	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0035	2980	2	2	0	0	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0036	2983	1	1	0	0	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0037	2980	1	0	0	1	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0038	2981	1	1	0	0	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0039	2983	1	1	0	0	0	0	copy fasta	YWHAG	chr7	76321799	76363991