JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
YWHAG_chr7_76321799_76363991	0/0	t0040	2983	1	1	0	0	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0041	2983	1	1	0	0	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0042	2984	1	1	0	0	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0043	2985	1	1	0	0	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0044	2984	1	0	0	1	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0045	2986	1	1	0	0	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0046	2982	1	1	0	0	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0047	2979	1	0	0	1	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0048	2982	1	1	0	0	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0049	2985	1	1	0	0	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0050	2986	1	1	0	0	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0051	2983	1	1	0	0	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0052	2982	1	0	0	1	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	1/0	t0053	2962	1	0	0	0	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0054	2998	1	0	0	1	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0055	2981	1	1	0	0	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0056	2985	1	0	0	1	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0057	2985	1	1	0	0	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0058	2982	1	0	0	0	0	1	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0059	2983	1	0	0	1	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0060	2985	1	0	0	1	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0061	2971	1	1	0	0	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0062	2982	1	0	0	0	0	1	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0063	2983	1	0	0	1	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0064	2980	1	0	0	1	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0065	2981	1	0	0	0	0	1	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0066	2983	1	1	0	0	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0067	2985	1	1	0	0	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0068	2982	1	1	0	0	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0069	2983	1	1	0	0	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0070	2985	1	1	0	0	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0071	2984	1	0	0	1	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0072	2985	1	0	0	1	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0073	2987	1	0	0	1	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0074	2984	1	0	0	1	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0075	2986	1	0	0	0	0	1	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0076	2983	1	0	1	0	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0077	2984	1	0	0	0	0	1	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0078	2985	1	0	1	0	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0079	2994	1	0	0	1	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0080	2982	1	0	0	0	0	1	copy fasta	YWHAG	chr7	76321799	76363991
YWHAG_chr7_76321799_76363991	0/0	t0081	2983	1	0	0	1	0	0	copy fasta	YWHAG	chr7	76321799	76363991
YWHAH_chr22_31939535_31962603	1/0	t0001	1011	248	50	36	131	6	24	copy fasta	YWHAH	chr22	31939535	31962603
YWHAH_chr22_31939535_31962603	0/1	t0002	1005	77	4	32	23	5	12	copy fasta	YWHAH	chr22	31939535	31962603
YWHAH_chr22_31939535_31962603	0/0	t0003	1004	28	12	0	16	0	0	copy fasta	YWHAH	chr22	31939535	31962603
YWHAH_chr22_31939535_31962603	0/0	t0004	1003	15	12	2	1	0	0	copy fasta	YWHAH	chr22	31939535	31962603
YWHAH_chr22_31939535_31962603	0/0	t0005	1005	10	1	4	0	3	2	copy fasta	YWHAH	chr22	31939535	31962603
YWHAH_chr22_31939535_31962603	0/0	t0006	1003	4	3	1	0	0	0	copy fasta	YWHAH	chr22	31939535	31962603
YWHAH_chr22_31939535_31962603	0/0	t0007	1004	4	0	1	2	0	1	copy fasta	YWHAH	chr22	31939535	31962603
YWHAH_chr22_31939535_31962603	0/0	t0008	1011	4	4	0	0	0	0	copy fasta	YWHAH	chr22	31939535	31962603