JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
YWHAH_chr22_31939535_31962603	0/0	t0009	1010	3	2	0	1	0	0	copy fasta	YWHAH	chr22	31939535	31962603
YWHAH_chr22_31939535_31962603	0/0	t0010	1011	3	3	0	0	0	0	copy fasta	YWHAH	chr22	31939535	31962603
YWHAH_chr22_31939535_31962603	0/0	t0011	1004	2	0	0	0	0	2	copy fasta	YWHAH	chr22	31939535	31962603
YWHAH_chr22_31939535_31962603	0/0	t0012	1012	2	0	1	0	0	1	copy fasta	YWHAH	chr22	31939535	31962603
YWHAH_chr22_31939535_31962603	0/0	t0013	1005	1	0	0	0	0	1	copy fasta	YWHAH	chr22	31939535	31962603
YWHAH_chr22_31939535_31962603	0/0	t0014	1012	1	0	0	1	0	0	copy fasta	YWHAH	chr22	31939535	31962603
YWHAH_chr22_31939535_31962603	0/0	t0015	1011	1	0	0	1	0	0	copy fasta	YWHAH	chr22	31939535	31962603
YWHAH_chr22_31939535_31962603	0/0	t0016	1011	1	0	0	1	0	0	copy fasta	YWHAH	chr22	31939535	31962603
YWHAH_chr22_31939535_31962603	0/0	t0017	1011	1	0	0	1	0	0	copy fasta	YWHAH	chr22	31939535	31962603
YWHAH_chr22_31939535_31962603	0/0	t0018	986	1	1	0	0	0	0	copy fasta	YWHAH	chr22	31939535	31962603
YWHAH_chr22_31939535_31962603	0/0	t0019	1011	1	0	1	0	0	0	copy fasta	YWHAH	chr22	31939535	31962603
YWHAH_chr22_31939535_31962603	0/0	t0020	1004	1	0	0	0	0	1	copy fasta	YWHAH	chr22	31939535	31962603
YWHAQ_chr2_9578967_9635997	1/1	t0001	1459	219	74	50	62	12	19	copy fasta	YWHAQ	chr2	9578967	9635997
YWHAQ_chr2_9578967_9635997	0/0	t0002	1465	25	1	9	1	4	10	copy fasta	YWHAQ	chr2	9578967	9635997
YWHAQ_chr2_9578967_9635997	0/0	t0003	1454	12	11	1	0	0	0	copy fasta	YWHAQ	chr2	9578967	9635997
YWHAQ_chr2_9578967_9635997	0/0	t0004	1454	3	2	1	0	0	0	copy fasta	YWHAQ	chr2	9578967	9635997
YWHAQ_chr2_9578967_9635997	0/0	t0005	1459	3	3	0	0	0	0	copy fasta	YWHAQ	chr2	9578967	9635997
YWHAQ_chr2_9578967_9635997	0/0	t0006	1465	3	0	3	0	0	0	copy fasta	YWHAQ	chr2	9578967	9635997
YWHAQ_chr2_9578967_9635997	0/0	t0007	1459	2	2	0	0	0	0	copy fasta	YWHAQ	chr2	9578967	9635997
YWHAQ_chr2_9578967_9635997	0/0	t0008	1460	2	2	0	0	0	0	copy fasta	YWHAQ	chr2	9578967	9635997
YWHAQ_chr2_9578967_9635997	0/0	t0009	1459	1	0	0	1	0	0	copy fasta	YWHAQ	chr2	9578967	9635997
YWHAQ_chr2_9578967_9635997	0/0	t0010	1459	1	1	0	0	0	0	copy fasta	YWHAQ	chr2	9578967	9635997
YWHAQ_chr2_9578967_9635997	0/0	t0011	1459	1	0	0	0	0	1	copy fasta	YWHAQ	chr2	9578967	9635997
YWHAZ_chr8_100911523_100957020	0/0	t0001	4280	12	1	0	9	0	2	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	1/0	t0002	4274	10	1	1	4	0	3	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0003	4276	9	0	2	6	0	1	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0004	4278	7	2	2	3	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0005	4290	7	0	0	7	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0006	4286	6	1	2	3	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0007	4290	6	0	3	3	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0008	4293	5	5	0	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0009	4284	5	0	3	2	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0010	4292	5	0	2	3	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0011	4294	5	0	3	1	0	1	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0012	4298	5	0	0	5	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0013	4283	4	0	1	1	1	1	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0014	4291	4	0	1	1	0	2	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0015	4292	4	1	0	3	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0016	4287	4	0	0	4	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0017	4287	4	3	1	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0018	4265	4	2	1	0	1	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0019	4278	4	4	0	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0020	4274	4	1	2	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0021	4276	4	0	1	3	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0022	4286	4	0	2	2	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0023	4288	4	0	0	3	0	1	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0024	4294	4	0	0	1	0	3	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0025	4296	4	1	0	2	0	1	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0026	4296	4	0	0	2	0	2	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0027	4252	4	0	0	4	0	0	copy fasta	YWHAZ	chr8	100911523	100957020