JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
YWHAZ_chr8_100911523_100957020	0/0	t0078	4278	1	0	0	0	0	1	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0079	4297	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0080	4256	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0081	4266	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0082	4269	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0083	4275	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0084	4276	1	0	1	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0085	4273	1	0	1	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0086	4276	1	0	0	0	0	1	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0087	4275	1	0	0	0	0	1	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0088	4282	1	0	1	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0089	4274	1	1	0	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0090	4284	1	1	0	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0091	4284	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0092	4288	1	1	0	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0093	4292	1	0	1	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0094	4287	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0095	4269	1	1	0	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0096	4288	1	1	0	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0097	4273	1	1	0	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0098	4287	1	0	1	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0099	4289	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0100	4288	1	0	0	0	0	1	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0101	4296	1	1	0	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0102	4295	1	1	0	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0103	4295	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0104	4291	1	0	1	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0105	4296	1	0	0	0	0	1	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0106	4298	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0107	4299	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0108	4295	1	0	1	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0109	4301	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0110	4303	1	0	0	0	0	1	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0111	4306	1	0	1	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0112	4291	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0113	4293	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0114	4297	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0115	4274	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0116	4261	1	1	0	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0117	4251	1	0	1	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0118	4251	1	1	0	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0119	4251	1	0	0	0	1	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0120	4250	1	0	1	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0121	4293	1	1	0	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0122	4287	1	1	0	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0123	4268	1	1	0	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0124	4281	1	1	0	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0125	4281	1	1	0	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0126	4285	1	1	0	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0127	4286	1	1	0	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020