JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
YWHAZ_chr8_100911523_100957020	0/0	t0128	4287	1	1	0	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0129	4289	1	1	0	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0130	4291	1	1	0	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0131	4291	1	1	0	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0132	4293	1	1	0	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0133	4295	1	1	0	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0134	4297	1	0	1	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0135	4297	1	1	0	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0136	4299	1	1	0	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0137	4299	1	1	0	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0138	4307	1	0	1	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0139	4311	1	1	0	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0140	4281	1	1	0	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0141	4275	1	0	0	0	1	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0142	4277	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0143	4279	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0144	4285	1	0	1	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0145	4294	1	1	0	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0146	4293	1	0	0	0	0	1	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0147	4289	1	0	1	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0148	4278	1	0	1	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0149	4279	1	1	0	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0150	4289	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0151	4261	1	1	0	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0152	4262	1	0	1	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0153	4267	1	1	0	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/1	t0154	4268	1	0	0	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0155	4264	1	1	0	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0156	4270	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0157	4266	1	0	0	0	1	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0158	4274	1	0	0	0	0	1	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0159	4275	1	0	1	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0160	4275	1	1	0	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0161	4272	1	0	0	0	0	1	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0162	4281	1	0	0	0	1	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0163	4281	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0164	4277	1	0	1	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0165	4282	1	0	0	0	1	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0166	4282	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0167	4284	1	0	1	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0168	4291	1	0	0	0	0	1	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0169	4286	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0170	4290	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0171	4293	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0172	4292	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0173	4292	1	0	1	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0174	4290	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0175	4291	1	0	0	0	0	1	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0176	4296	1	0	0	0	0	1	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0177	4300	1	0	0	0	0	1	copy fasta	YWHAZ	chr8	100911523	100957020