JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
YWHAZ_chr8_100911523_100957020	0/0	t0178	4296	1	0	0	0	0	1	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0179	4296	1	0	0	0	0	1	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0180	4296	1	0	1	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0181	4292	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0182	4298	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0183	4299	1	1	0	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0184	4295	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0185	4293	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0186	4300	1	0	1	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0187	4301	1	0	1	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0188	4301	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0189	4303	1	1	0	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0190	4302	1	0	1	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0191	4298	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0192	4299	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0193	4304	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0194	4300	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0195	4305	1	1	0	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0196	4305	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0197	4308	1	0	1	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0198	4304	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0199	4312	1	0	1	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0200	4317	1	1	0	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0201	4289	1	1	0	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0202	4294	1	0	1	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0203	4294	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0204	4291	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0205	4295	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0206	4295	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0207	4297	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0208	4300	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0209	4260	1	1	0	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0210	4267	1	0	0	0	0	1	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0211	4275	1	0	0	0	0	1	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0212	4282	1	1	0	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0213	4296	1	0	1	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0214	4301	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0215	4303	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0216	4310	1	0	0	1	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YWHAZ_chr8_100911523_100957020	0/0	t0217	4262	1	1	0	0	0	0	copy fasta	YWHAZ	chr8	100911523	100957020
YY1AP1_chr1_155654454_155693774	1/1	t0001	471	256	66	42	102	12	32	copy fasta	YY1AP1	chr1	155654454	155693774
YY1AP1_chr1_155654454_155693774	0/0	t0002	471	10	10	0	0	0	0	copy fasta	YY1AP1	chr1	155654454	155693774
YY1AP1_chr1_155654454_155693774	0/0	t0003	471	5	4	1	0	0	0	copy fasta	YY1AP1	chr1	155654454	155693774
YY1AP1_chr1_155654454_155693774	0/0	t0004	471	3	2	1	0	0	0	copy fasta	YY1AP1	chr1	155654454	155693774
YY1AP1_chr1_155654454_155693774	0/0	t0005	471	3	3	0	0	0	0	copy fasta	YY1AP1	chr1	155654454	155693774
YY1AP1_chr1_155654454_155693774	0/0	t0006	471	1	1	0	0	0	0	copy fasta	YY1AP1	chr1	155654454	155693774
YY1_chr14_100234144_100287788	0/0	t0001	5290	126	3	34	64	6	19	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0002	5289	54	10	12	27	1	4	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0003	5291	36	4	8	18	0	6	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0004	5291	6	3	1	2	0	0	copy fasta	YY1	chr14	100234144	100287788