JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
YY1_chr14_100234144_100287788	0/0	t0005	5289	6	6	0	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0006	5282	5	0	2	0	2	1	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0007	5290	5	0	2	0	2	1	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	1/0	t0008	5290	5	4	0	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0009	5287	5	5	0	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0010	5294	3	3	0	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0011	5291	3	0	0	3	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0012	5292	3	1	0	2	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0013	5289	3	0	0	3	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0014	5292	3	0	1	0	0	2	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0015	5291	3	0	2	1	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0016	5290	3	3	0	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0017	5290	3	0	1	2	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0018	5290	3	2	1	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0019	5289	3	2	1	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0020	5290	2	2	0	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0021	5293	2	2	0	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0022	5290	2	2	0	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0023	5290	2	2	0	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/1	t0024	5290	2	0	1	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0025	5289	2	0	0	2	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0026	5293	2	2	0	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0027	5290	2	0	0	2	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0028	5300	2	2	0	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0029	5290	2	2	0	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0030	5288	2	0	0	2	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0031	5292	2	0	2	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0032	5287	2	2	0	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0033	5290	2	0	0	0	1	1	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0034	5282	1	1	0	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0035	5294	1	1	0	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0036	5290	1	0	0	0	0	1	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0037	5293	1	1	0	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0038	5295	1	1	0	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0039	5293	1	1	0	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0040	5291	1	1	0	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0041	5289	1	1	0	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0042	5288	1	1	0	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0043	5293	1	1	0	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0044	5288	1	0	0	1	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0045	5277	1	1	0	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0046	5276	1	1	0	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0047	5276	1	1	0	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0048	5294	1	0	1	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0049	5290	1	0	0	1	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0050	5290	1	1	0	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0051	5289	1	0	0	1	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0052	5289	1	0	1	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0053	5288	1	1	0	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0054	5275	1	0	0	1	0	0	copy fasta	YY1	chr14	100234144	100287788