JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
YY1_chr14_100234144_100287788	0/0	t0055	5289	1	1	0	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0056	5291	1	1	0	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0057	5302	1	0	0	1	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0058	5291	1	0	0	1	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0059	5289	1	0	0	1	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0060	5290	1	1	0	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0061	5290	1	0	0	0	0	1	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0062	5288	1	0	1	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0063	5290	1	1	0	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0064	5298	1	1	0	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0065	5296	1	1	0	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0066	5293	1	1	0	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0067	5289	1	0	1	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0068	5288	1	1	0	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0069	5289	1	1	0	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0070	5288	1	1	0	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0071	5279	1	1	0	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0072	5288	1	1	0	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0073	5287	1	1	0	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0074	5287	1	1	0	0	0	0	copy fasta	YY1	chr14	100234144	100287788
YY1_chr14_100234144_100287788	0/0	t0075	5289	1	0	0	1	0	0	copy fasta	YY1	chr14	100234144	100287788
YY2_chrX_21850987_21863740	1/1	t0001	1636	68	5	7	40	3	11	copy fasta	YY2	chrX	21850987	21863740
YY2_chrX_21850987_21863740	0/0	t0002	1616	48	4	9	35	0	0	copy fasta	YY2	chrX	21850987	21863740
YY2_chrX_21850987_21863740	0/0	t0003	1635	43	1	6	29	1	6	copy fasta	YY2	chrX	21850987	21863740
YY2_chrX_21850987_21863740	0/0	t0004	1616	34	13	8	9	1	3	copy fasta	YY2	chrX	21850987	21863740
YY2_chrX_21850987_21863740	0/0	t0005	1597	33	8	5	17	0	3	copy fasta	YY2	chrX	21850987	21863740
YY2_chrX_21850987_21863740	0/0	t0006	1617	18	3	2	7	4	2	copy fasta	YY2	chrX	21850987	21863740
YY2_chrX_21850987_21863740	0/0	t0007	1617	16	12	2	2	0	0	copy fasta	YY2	chrX	21850987	21863740
YY2_chrX_21850987_21863740	0/0	t0008	1635	14	10	3	1	0	0	copy fasta	YY2	chrX	21850987	21863740
YY2_chrX_21850987_21863740	0/0	t0009	1655	9	2	4	2	0	1	copy fasta	YY2	chrX	21850987	21863740
YY2_chrX_21850987_21863740	0/0	t0010	1636	6	2	0	2	0	2	copy fasta	YY2	chrX	21850987	21863740
YY2_chrX_21850987_21863740	0/0	t0011	1654	6	3	0	1	2	0	copy fasta	YY2	chrX	21850987	21863740
YY2_chrX_21850987_21863740	0/0	t0012	1616	2	0	0	2	0	0	copy fasta	YY2	chrX	21850987	21863740
YY2_chrX_21850987_21863740	0/0	t0013	1654	2	2	0	0	0	0	copy fasta	YY2	chrX	21850987	21863740
YY2_chrX_21850987_21863740	0/0	t0014	1597	2	2	0	0	0	0	copy fasta	YY2	chrX	21850987	21863740
YY2_chrX_21850987_21863740	0/0	t0015	1616	2	2	0	0	0	0	copy fasta	YY2	chrX	21850987	21863740
YY2_chrX_21850987_21863740	0/0	t0016	1636	2	0	0	2	0	0	copy fasta	YY2	chrX	21850987	21863740
YY2_chrX_21850987_21863740	0/0	t0017	1578	1	0	0	1	0	0	copy fasta	YY2	chrX	21850987	21863740
YY2_chrX_21850987_21863740	0/0	t0018	1596	1	1	0	0	0	0	copy fasta	YY2	chrX	21850987	21863740
YY2_chrX_21850987_21863740	0/0	t0019	1598	1	0	0	0	0	1	copy fasta	YY2	chrX	21850987	21863740
YY2_chrX_21850987_21863740	0/0	t0020	1597	1	1	0	0	0	0	copy fasta	YY2	chrX	21850987	21863740
YY2_chrX_21850987_21863740	0/0	t0021	1597	1	0	1	0	0	0	copy fasta	YY2	chrX	21850987	21863740
YY2_chrX_21850987_21863740	0/0	t0022	1617	1	1	0	0	0	0	copy fasta	YY2	chrX	21850987	21863740
YY2_chrX_21850987_21863740	0/0	t0023	1616	1	0	1	0	0	0	copy fasta	YY2	chrX	21850987	21863740
YY2_chrX_21850987_21863740	0/0	t0024	1616	1	1	0	0	0	0	copy fasta	YY2	chrX	21850987	21863740
YY2_chrX_21850987_21863740	0/0	t0025	1615	1	0	0	1	0	0	copy fasta	YY2	chrX	21850987	21863740
YY2_chrX_21850987_21863740	0/0	t0026	1616	1	1	0	0	0	0	copy fasta	YY2	chrX	21850987	21863740
YY2_chrX_21850987_21863740	0/0	t0027	1617	1	0	0	0	0	1	copy fasta	YY2	chrX	21850987	21863740
YY2_chrX_21850987_21863740	0/0	t0028	1633	1	0	0	1	0	0	copy fasta	YY2	chrX	21850987	21863740
YY2_chrX_21850987_21863740	0/0	t0029	1654	1	1	0	0	0	0	copy fasta	YY2	chrX	21850987	21863740