JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
YY2_chrX_21850987_21863740	0/0	t0030	1618	1	0	1	0	0	0	copy fasta	YY2	chrX	21850987	21863740
YY2_chrX_21850987_21863740	0/0	t0031	1617	1	0	0	1	0	0	copy fasta	YY2	chrX	21850987	21863740
YY2_chrX_21850987_21863740	0/0	t0032	1636	1	0	0	1	0	0	copy fasta	YY2	chrX	21850987	21863740
YY2_chrX_21850987_21863740	0/0	t0033	1634	1	0	0	0	0	1	copy fasta	YY2	chrX	21850987	21863740
YY2_chrX_21850987_21863740	0/0	t0034	1635	1	1	0	0	0	0	copy fasta	YY2	chrX	21850987	21863740
YY2_chrX_21850987_21863740	0/0	t0035	1636	1	0	1	0	0	0	copy fasta	YY2	chrX	21850987	21863740
ZACN_chr17_76074182_76087806	1/1	t0001	237	390	92	72	176	16	32	copy fasta	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	t0002	237	1	0	0	0	0	1	copy fasta	ZACN	chr17	76074182	76087806
ZACN_chr17_76074182_76087806	0/0	t0003	237	1	0	0	0	0	1	copy fasta	ZACN	chr17	76074182	76087806
ZAN_chr7_100728595_100802797	1/1	t0001	262	256	57	46	100	11	40	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	t0002	66	51	26	6	14	3	2	copy fasta	ZAN	chr7	100728595	100802797
ZAN_chr7_100728595_100802797	0/0	t0003	262	1	1	0	0	0	0	copy fasta	ZAN	chr7	100728595	100802797
ZAP70_chr2_97708576_97744860	1/1	t0001	562	221	54	35	102	9	19	copy fasta	ZAP70	chr2	97708576	97744860
ZAP70_chr2_97708576_97744860	0/0	t0002	562	49	27	11	6	2	3	copy fasta	ZAP70	chr2	97708576	97744860
ZAP70_chr2_97708576_97744860	0/0	t0003	562	30	1	18	0	5	6	copy fasta	ZAP70	chr2	97708576	97744860
ZAP70_chr2_97708576_97744860	0/0	t0004	562	22	0	1	21	0	0	copy fasta	ZAP70	chr2	97708576	97744860
ZAP70_chr2_97708576_97744860	0/0	t0005	562	21	0	4	17	0	0	copy fasta	ZAP70	chr2	97708576	97744860
ZAP70_chr2_97708576_97744860	0/0	t0006	562	11	7	0	1	0	3	copy fasta	ZAP70	chr2	97708576	97744860
ZAP70_chr2_97708576_97744860	0/0	t0007	562	10	9	1	0	0	0	copy fasta	ZAP70	chr2	97708576	97744860
ZAP70_chr2_97708576_97744860	0/0	t0008	562	1	0	0	0	0	1	copy fasta	ZAP70	chr2	97708576	97744860
ZAP70_chr2_97708576_97744860	0/0	t0009	562	1	1	0	0	0	0	copy fasta	ZAP70	chr2	97708576	97744860
ZAP70_chr2_97708576_97744860	0/0	t0010	562	1	1	0	0	0	0	copy fasta	ZAP70	chr2	97708576	97744860
ZAP70_chr2_97708576_97744860	0/0	t0011	562	1	0	0	1	0	0	copy fasta	ZAP70	chr2	97708576	97744860
ZAR1L_chr13_32298699_32320363	0/0	t0001	619	197	26	38	112	8	13	copy fasta	ZAR1L	chr13	32298699	32320363
ZAR1L_chr13_32298699_32320363	1/1	t0002	619	192	47	30	81	8	24	copy fasta	ZAR1L	chr13	32298699	32320363
ZAR1L_chr13_32298699_32320363	0/0	t0003	619	67	8	17	28	2	12	copy fasta	ZAR1L	chr13	32298699	32320363
ZAR1L_chr13_32298699_32320363	0/0	t0004	619	10	9	1	0	0	0	copy fasta	ZAR1L	chr13	32298699	32320363
ZAR1L_chr13_32298699_32320363	0/0	t0005	619	2	1	0	1	0	0	copy fasta	ZAR1L	chr13	32298699	32320363
ZAR1L_chr13_32298699_32320363	0/0	t0006	619	2	2	0	0	0	0	copy fasta	ZAR1L	chr13	32298699	32320363
ZAR1L_chr13_32298699_32320363	0/0	t0007	619	1	1	0	0	0	0	copy fasta	ZAR1L	chr13	32298699	32320363
ZAR1L_chr13_32298699_32320363	0/0	t0008	619	1	1	0	0	0	0	copy fasta	ZAR1L	chr13	32298699	32320363
ZAR1L_chr13_32298699_32320363	0/0	t0009	619	1	0	0	0	0	1	copy fasta	ZAR1L	chr13	32298699	32320363
ZAR1L_chr13_32298699_32320363	0/0	t0010	619	1	1	0	0	0	0	copy fasta	ZAR1L	chr13	32298699	32320363
ZAR1_chr4_48485252_48499389	1/1	t0001	186	274	83	56	91	14	28	copy fasta	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	t0002	186	77	4	5	58	0	10	copy fasta	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	t0003	186	44	11	10	17	0	6	copy fasta	ZAR1	chr4	48485252	48499389
ZAR1_chr4_48485252_48499389	0/0	t0004	186	1	0	1	0	0	0	copy fasta	ZAR1	chr4	48485252	48499389
ZBBX_chr3_167234843_167385297	1/1	t0001	1288	226	46	60	79	16	23	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	t0002	1288	27	16	1	9	0	1	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	t0003	1285	12	12	0	0	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	t0004	1288	8	7	1	0	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	t0005	1288	7	7	0	0	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	t0006	1288	3	0	0	0	0	3	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	t0007	1288	3	3	0	0	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	t0008	1288	1	0	0	0	0	1	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	t0009	1288	1	0	0	0	0	1	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	t0010	1288	1	1	0	0	0	0	copy fasta	ZBBX	chr3	167234843	167385297
ZBBX_chr3_167234843_167385297	0/0	t0011	1288	1	0	0	0	0	1	copy fasta	ZBBX	chr3	167234843	167385297
ZBED1_chrX_2481435_2505976	0/1	t0001	2414	31	3	18	3	3	3	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0002	2409	28	2	2	21	1	2	copy fasta	ZBED1	chrX	2481435	2505976