JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C1GALT1_chr7_7177544_7253616	0/0	t0063	5184	1	0	1	0	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0064	5184	1	1	0	0	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0065	5184	1	1	0	0	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1GALT1_chr7_7177544_7253616	0/0	t0066	5186	1	1	0	0	0	0	copy fasta	C1GALT1	chr7	7177544	7253616
C1QA_chr1_22631628_22644678	1/1	t0001	354	425	92	82	198	15	36	copy fasta	C1QA	chr1	22631628	22644678
C1QA_chr1_22631628_22644678	0/0	t0002	354	3	3	0	0	0	0	copy fasta	C1QA	chr1	22631628	22644678
C1QA_chr1_22631628_22644678	0/0	t0003	354	1	1	0	0	0	0	copy fasta	C1QA	chr1	22631628	22644678
C1QA_chr1_22631628_22644678	0/0	t0004	354	1	0	0	1	0	0	copy fasta	C1QA	chr1	22631628	22644678
C1QA_chr1_22631628_22644678	0/0	t0005	354	1	0	0	0	1	0	copy fasta	C1QA	chr1	22631628	22644678
C1QA_chr1_22631628_22644678	0/0	t0006	354	1	0	0	1	0	0	copy fasta	C1QA	chr1	22631628	22644678
C1QBP_chr17_5427777_5444155	1/1	t0001	321	209	79	52	46	7	23	copy fasta	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	t0002	321	187	9	25	127	4	22	copy fasta	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	t0003	322	4	0	2	0	1	1	copy fasta	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	t0004	321	3	3	0	0	0	0	copy fasta	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	t0005	321	2	2	0	0	0	0	copy fasta	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	t0006	321	1	1	0	0	0	0	copy fasta	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	t0007	321	1	0	1	0	0	0	copy fasta	C1QBP	chr17	5427777	5444155
C1QBP_chr17_5427777_5444155	0/0	t0008	321	1	0	0	1	0	0	copy fasta	C1QBP	chr17	5427777	5444155
C1QB_chr1_22648236_22666637	0/1	t0001	343	419	93	71	199	13	42	copy fasta	C1QB	chr1	22648236	22666637
C1QB_chr1_22648236_22666637	1/0	t0002	343	4	0	3	0	0	0	copy fasta	C1QB	chr1	22648236	22666637
C1QB_chr1_22648236_22666637	0/0	t0003	343	3	0	0	3	0	0	copy fasta	C1QB	chr1	22648236	22666637
C1QB_chr1_22648236_22666637	0/0	t0004	343	3	1	2	0	0	0	copy fasta	C1QB	chr1	22648236	22666637
C1QB_chr1_22648236_22666637	0/0	t0005	343	1	0	0	0	1	0	copy fasta	C1QB	chr1	22648236	22666637
C1QC_chr1_22638633_22653108	0/1	t0001	402	172	51	30	71	4	15	copy fasta	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	1/0	t0002	421	91	1	27	39	8	15	copy fasta	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	t0003	419	85	28	12	39	3	3	copy fasta	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	t0004	420	46	2	6	29	1	8	copy fasta	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	t0005	422	17	0	0	17	0	0	copy fasta	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	t0006	419	11	9	2	0	0	0	copy fasta	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	t0007	419	7	1	1	5	0	0	copy fasta	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	t0008	419	3	1	2	0	0	0	copy fasta	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	t0009	419	3	3	0	0	0	0	copy fasta	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	t0010	419	2	0	0	2	0	0	copy fasta	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	t0011	402	2	2	0	0	0	0	copy fasta	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	t0012	403	2	0	2	0	0	0	copy fasta	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	t0013	404	2	1	0	0	0	1	copy fasta	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	t0014	419	2	0	0	2	0	0	copy fasta	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	t0015	419	1	1	0	0	0	0	copy fasta	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	t0016	402	1	0	0	1	0	0	copy fasta	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	t0017	403	1	0	0	1	0	0	copy fasta	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	t0018	402	1	0	0	1	0	0	copy fasta	C1QC	chr1	22638633	22653108
C1QC_chr1_22638633_22653108	0/0	t0019	421	1	0	0	1	0	0	copy fasta	C1QC	chr1	22638633	22653108
C1QL1_chr17_44954693_44973303	0/1	t0001	751	240	72	39	91	7	30	copy fasta	C1QL1	chr17	44954693	44973303
C1QL1_chr17_44954693_44973303	1/0	t0002	751	151	11	32	83	7	17	copy fasta	C1QL1	chr17	44954693	44973303
C1QL1_chr17_44954693_44973303	0/0	t0003	751	4	4	0	0	0	0	copy fasta	C1QL1	chr17	44954693	44973303
C1QL1_chr17_44954693_44973303	0/0	t0004	751	3	0	0	3	0	0	copy fasta	C1QL1	chr17	44954693	44973303
C1QL1_chr17_44954693_44973303	0/0	t0005	751	3	0	0	0	0	3	copy fasta	C1QL1	chr17	44954693	44973303
C1QL1_chr17_44954693_44973303	0/0	t0006	751	3	3	0	0	0	0	copy fasta	C1QL1	chr17	44954693	44973303
C1QL1_chr17_44954693_44973303	0/0	t0007	751	1	1	0	0	0	0	copy fasta	C1QL1	chr17	44954693	44973303
C1QL1_chr17_44954693_44973303	0/0	t0008	751	1	0	0	1	0	0	copy fasta	C1QL1	chr17	44954693	44973303