JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZBED1_chrX_2481435_2505976	0/0	t0003	2414	23	1	6	10	0	6	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0004	2409	16	2	2	12	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0005	2414	13	13	0	0	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0006	2414	11	11	0	0	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0007	2414	10	0	5	5	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0008	2414	8	7	1	0	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0009	2414	6	0	2	0	2	2	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0010	2414	6	1	3	0	2	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0011	2409	5	0	0	5	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0012	2414	4	0	0	2	1	1	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0013	2414	4	2	1	1	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0014	2414	3	0	0	3	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0015	2414	3	3	0	0	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0016	2414	3	0	0	3	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0017	2415	3	0	0	3	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0018	2409	2	0	0	2	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0019	2414	2	2	0	0	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0020	2414	2	0	2	0	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0021	2414	2	0	2	0	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0022	2414	2	2	0	0	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0023	2415	2	0	0	2	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0024	2414	2	2	0	0	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0025	2414	1	0	1	0	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0026	2407	1	0	0	1	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0027	2414	1	0	1	0	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0028	2409	1	0	0	1	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0029	2414	1	1	0	0	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0030	2414	1	0	0	1	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0031	2408	1	0	0	1	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0032	2409	1	0	0	1	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0033	2414	1	0	0	1	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0034	2409	1	0	0	1	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0035	2410	1	0	0	1	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0036	2409	1	0	0	1	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0037	2409	1	0	0	0	0	1	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0038	2408	1	0	0	1	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0039	2414	1	0	1	0	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0040	2414	1	1	0	0	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0041	2414	1	1	0	0	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0042	2415	1	1	0	0	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0043	2414	1	0	0	0	0	1	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0044	2414	1	0	0	1	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0045	2414	1	1	0	0	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0046	2414	1	0	0	0	0	1	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0047	2409	1	0	1	0	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0048	2416	1	0	0	1	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0049	2414	1	1	0	0	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0050	2414	1	0	0	1	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0051	2415	1	0	0	1	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	1/0	t0052	2414	1	0	0	0	0	0	copy fasta	ZBED1	chrX	2481435	2505976