JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZBED1_chrX_2481435_2505976	0/0	t0053	2416	1	0	0	1	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED1_chrX_2481435_2505976	0/0	t0054	2415	1	1	0	0	0	0	copy fasta	ZBED1	chrX	2481435	2505976
ZBED2_chr3_111587900_111600346	0/1	t0001	1558	318	36	65	170	13	33	copy fasta	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	t0002	1558	44	25	3	15	0	1	copy fasta	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	1/0	t0003	1558	42	27	7	3	1	3	copy fasta	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	t0004	1558	20	0	3	8	0	9	copy fasta	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	t0005	1558	4	0	0	4	0	0	copy fasta	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	t0006	1558	3	3	0	0	0	0	copy fasta	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	t0007	1558	2	2	0	0	0	0	copy fasta	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	t0008	1558	1	0	0	0	0	1	copy fasta	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	t0009	1558	1	1	0	0	0	0	copy fasta	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	t0010	1558	1	1	0	0	0	0	copy fasta	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	t0011	1558	1	0	1	0	0	0	copy fasta	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	t0012	1558	1	0	1	0	0	0	copy fasta	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	t0013	1558	1	1	0	0	0	0	copy fasta	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	t0014	1558	1	0	1	0	0	0	copy fasta	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	t0015	1558	1	0	1	0	0	0	copy fasta	ZBED2	chr3	111587900	111600346
ZBED2_chr3_111587900_111600346	0/0	t0016	1558	1	0	0	0	0	1	copy fasta	ZBED2	chr3	111587900	111600346
ZBED3_chr5_77067072_77092285	1/0	t0001	5430	27	0	0	19	0	7	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0002	5419	27	0	10	16	0	1	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0003	5417	19	1	2	13	0	3	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0004	5418	18	0	1	16	0	1	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0005	5444	10	0	0	9	0	1	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0006	5421	10	2	1	7	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0007	5429	9	3	1	4	0	1	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0008	5431	7	2	1	4	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0009	5433	7	1	1	4	1	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0010	5412	7	5	0	2	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0011	5442	7	0	0	7	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0012	5446	7	1	0	6	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0013	5435	6	0	1	4	0	1	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0014	5427	6	0	0	4	2	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0015	5422	5	0	2	0	0	3	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0016	5416	5	0	0	4	1	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0017	5414	5	1	0	3	0	1	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0018	5434	5	0	0	5	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/1	t0019	5409	5	0	3	1	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0020	5415	5	0	2	2	0	1	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0021	5425	4	0	2	2	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0022	5427	4	2	1	1	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0023	5436	4	0	0	4	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0024	5440	4	0	0	4	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0025	5423	4	0	0	3	0	1	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0026	5425	4	1	0	3	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0027	5407	4	0	3	1	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0028	5411	4	1	1	1	0	1	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0029	5387	3	2	1	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0030	5431	3	1	0	2	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0031	5423	3	3	0	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0032	5420	3	0	0	1	1	1	copy fasta	ZBED3	chr5	77067072	77092285