JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZBED3_chr5_77067072_77092285	0/0	t0083	5400	1	1	0	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0084	5412	1	1	0	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0085	5415	1	1	0	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0086	5417	1	0	1	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0087	5423	1	0	1	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0088	5389	1	1	0	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0089	5391	1	1	0	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0090	5395	1	1	0	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0091	5399	1	1	0	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0092	5440	1	0	0	0	1	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0093	5426	1	0	0	0	0	1	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0094	5432	1	0	1	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0095	5430	1	0	1	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0096	5418	1	0	1	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0097	5420	1	0	0	0	0	1	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0098	5424	1	0	1	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0099	5410	1	1	0	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0100	5410	1	1	0	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0101	5406	1	1	0	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0102	5404	1	1	0	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0103	5429	1	0	0	0	0	1	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0104	5401	1	1	0	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0105	5431	1	1	0	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0106	5431	1	0	1	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0107	5423	1	0	0	0	0	1	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0108	5427	1	0	1	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0109	5425	1	0	0	0	0	1	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0110	5433	1	0	1	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0111	5429	1	0	0	1	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0112	5405	1	0	0	1	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0113	5425	1	0	0	1	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0114	5427	1	1	0	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0115	5431	1	1	0	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0116	5421	1	0	0	0	0	1	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0117	5423	1	0	0	1	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0118	5429	1	0	0	1	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0119	5431	1	0	1	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0120	5425	1	1	0	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0121	5423	1	0	1	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0122	5431	1	0	0	1	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0123	5444	1	0	0	1	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0124	5452	1	1	0	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0125	5448	1	1	0	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0126	5448	1	1	0	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0127	5496	1	1	0	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0128	5400	1	1	0	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0129	5404	1	1	0	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0130	5412	1	1	0	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0131	5416	1	1	0	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0132	5428	1	0	0	1	0	0	copy fasta	ZBED3	chr5	77067072	77092285