JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZBED3_chr5_77067072_77092285	0/0	t0133	5422	1	0	0	1	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0134	5418	1	0	0	1	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0135	5454	1	0	0	0	0	1	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0136	5420	1	0	0	0	0	1	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0137	5418	1	0	1	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0138	5413	1	0	1	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0139	5412	1	0	0	0	1	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0140	5458	1	0	0	1	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0141	5428	1	0	0	1	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0142	5440	1	0	0	1	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0143	5442	1	0	0	1	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0144	5446	1	0	0	0	0	1	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0145	5450	1	0	0	1	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0146	5430	1	0	0	0	0	1	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0147	5430	1	0	0	1	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0148	5430	1	0	0	1	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0149	5456	1	0	0	1	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0150	5468	1	0	0	1	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0151	5442	1	0	0	1	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0152	5430	1	0	0	0	0	1	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0153	5412	1	1	0	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0154	5430	1	1	0	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0155	5434	1	0	0	1	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0156	5440	1	0	0	1	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0157	5631	1	1	0	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0158	5440	1	0	0	1	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0159	5442	1	0	0	1	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0160	5635	1	1	0	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0161	5417	1	1	0	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0162	5417	1	1	0	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0163	5419	1	1	0	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0164	5417	1	1	0	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0165	5608	1	0	0	0	0	1	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0166	5622	1	0	0	0	0	1	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0167	5624	1	1	0	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0168	5626	1	1	0	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0169	5418	1	1	0	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0170	5418	1	1	0	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0171	5428	1	0	0	1	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0172	5417	1	0	0	0	1	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0173	5419	1	0	1	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0174	5425	1	0	0	0	1	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0175	5413	1	0	0	0	1	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0176	5399	1	0	1	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0177	5417	1	1	0	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0178	5417	1	0	0	1	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0179	5421	1	0	0	0	0	1	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0180	5407	1	0	0	1	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0181	5413	1	0	0	1	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0182	5423	1	1	0	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285