JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZBED3_chr5_77067072_77092285	0/0	t0183	5429	1	0	1	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0184	5431	1	0	0	1	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0185	5433	1	0	0	1	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0186	5415	1	0	0	1	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0187	5433	1	0	0	0	1	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0188	5419	1	0	1	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0189	5427	1	0	1	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0190	5417	1	0	0	0	0	1	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0191	5421	1	0	1	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0192	5399	1	0	0	1	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0193	5403	1	0	0	1	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0194	5405	1	0	0	0	0	1	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0195	5409	1	1	0	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0196	5411	1	0	0	0	1	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0197	5417	1	0	0	0	1	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0198	5421	1	0	1	0	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0199	5407	1	0	0	1	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED3_chr5_77067072_77092285	0/0	t0200	5436	1	0	0	1	0	0	copy fasta	ZBED3	chr5	77067072	77092285
ZBED4_chr22_49848844_49895080	0/1	t0001	3378	156	20	29	88	4	14	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	t0002	3378	49	25	4	11	4	5	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	t0003	3377	25	16	0	8	0	1	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	t0004	3378	22	0	2	15	0	5	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	t0005	3377	18	10	3	3	0	2	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	t0006	3377	10	8	1	0	0	1	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	t0007	3377	4	3	1	0	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	t0008	3377	3	3	0	0	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	1/0	t0009	3378	3	0	1	0	0	1	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	t0010	3378	3	0	0	0	0	3	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	t0011	3378	2	0	0	2	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	t0012	3378	2	1	1	0	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	t0013	3378	2	0	0	1	0	1	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	t0014	3377	1	1	0	0	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	t0015	3377	1	0	0	0	0	1	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	t0016	3378	1	0	0	1	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	t0017	3378	1	1	0	0	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	t0018	3378	1	0	0	1	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	t0019	3378	1	0	0	1	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	t0020	3378	1	0	0	1	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	t0021	3378	1	0	0	1	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	t0022	3378	1	0	0	1	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	t0023	3378	1	0	0	1	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	t0024	3378	1	0	0	0	0	1	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	t0025	3378	1	0	0	1	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	t0026	3378	1	0	0	1	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	t0027	3378	1	0	0	0	0	1	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	t0028	3377	1	1	0	0	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	t0029	3377	1	1	0	0	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED4_chr22_49848844_49895080	0/0	t0030	3378	1	0	0	1	0	0	copy fasta	ZBED4	chr22	49848844	49895080
ZBED5_chr11_10847706_10863053	1/1	t0001	606	416	90	70	195	14	45	copy fasta	ZBED5	chr11	10847706	10863053
ZBED5_chr11_10847706_10863053	0/0	t0002	606	2	1	1	0	0	0	copy fasta	ZBED5	chr11	10847706	10863053