JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZBED6_chr1_203790623_203859124	0/0	t0044	8758	1	0	0	1	0	0	copy fasta	ZBED6	chr1	203790623	203859124
ZBED6_chr1_203790623_203859124	0/0	t0045	8759	1	0	0	1	0	0	copy fasta	ZBED6	chr1	203790623	203859124
ZBED6_chr1_203790623_203859124	0/0	t0046	8758	1	0	0	1	0	0	copy fasta	ZBED6	chr1	203790623	203859124
ZBED6_chr1_203790623_203859124	0/0	t0047	8758	1	0	0	1	0	0	copy fasta	ZBED6	chr1	203790623	203859124
ZBED6_chr1_203790623_203859124	0/0	t0048	8758	1	1	0	0	0	0	copy fasta	ZBED6	chr1	203790623	203859124
ZBED6_chr1_203790623_203859124	0/0	t0049	8757	1	1	0	0	0	0	copy fasta	ZBED6	chr1	203790623	203859124
ZBED6_chr1_203790623_203859124	0/0	t0050	8756	1	0	0	1	0	0	copy fasta	ZBED6	chr1	203790623	203859124
ZBED6_chr1_203790623_203859124	0/0	t0051	8758	1	0	0	1	0	0	copy fasta	ZBED6	chr1	203790623	203859124
ZBED6_chr1_203790623_203859124	0/0	t0052	8759	1	1	0	0	0	0	copy fasta	ZBED6	chr1	203790623	203859124
ZBED6_chr1_203790623_203859124	0/0	t0053	8756	1	0	0	1	0	0	copy fasta	ZBED6	chr1	203790623	203859124
ZBED6_chr1_203790623_203859124	0/0	t0054	8759	1	1	0	0	0	0	copy fasta	ZBED6	chr1	203790623	203859124
ZBED6_chr1_203790623_203859124	0/0	t0055	8758	1	1	0	0	0	0	copy fasta	ZBED6	chr1	203790623	203859124
ZBED6_chr1_203790623_203859124	0/0	t0056	8756	1	1	0	0	0	0	copy fasta	ZBED6	chr1	203790623	203859124
ZBED6_chr1_203790623_203859124	0/0	t0057	8758	1	0	0	1	0	0	copy fasta	ZBED6	chr1	203790623	203859124
ZBED6_chr1_203790623_203859124	0/0	t0058	8758	1	0	0	1	0	0	copy fasta	ZBED6	chr1	203790623	203859124
ZBED6_chr1_203790623_203859124	0/0	t0059	8757	1	0	0	1	0	0	copy fasta	ZBED6	chr1	203790623	203859124
ZBED6_chr1_203790623_203859124	0/0	t0060	8758	1	0	1	0	0	0	copy fasta	ZBED6	chr1	203790623	203859124
ZBP1_chr20_57598852_57625426	1/1	t0001	853	197	68	36	66	8	17	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	t0002	853	107	2	21	72	4	8	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	t0003	853	67	13	14	28	2	10	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	t0004	853	21	1	5	4	3	8	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	t0005	853	18	0	1	16	0	1	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	t0006	853	15	0	3	11	0	1	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	t0007	853	5	4	1	0	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	t0008	853	5	0	1	4	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	t0009	853	2	2	0	0	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	t0010	853	2	2	0	0	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	t0011	853	2	2	0	0	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	t0012	853	2	0	0	0	0	2	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	t0013	837	1	1	0	0	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	t0014	853	1	1	0	0	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	t0015	837	1	1	0	0	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	t0016	853	1	0	1	0	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	t0017	853	1	0	1	0	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	t0018	853	1	0	0	1	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	t0019	853	1	1	0	0	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	t0020	853	1	1	0	0	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	t0021	853	1	1	0	0	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	t0022	853	1	0	0	0	0	1	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	t0023	853	1	0	0	0	1	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	t0024	853	1	0	0	1	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBP1_chr20_57598852_57625426	0/0	t0025	853	1	0	0	1	0	0	copy fasta	ZBP1	chr20	57598852	57625426
ZBTB10_chr8_80481226_80531265	1/0	t0001	7323	97	8	14	58	4	12	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0002	7328	56	33	12	5	3	3	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0003	7328	43	2	3	34	0	4	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0004	7328	15	12	3	0	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0005	7322	8	6	2	0	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0006	7323	7	0	3	0	1	3	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0007	7323	4	0	0	4	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/1	t0008	7331	4	0	1	0	0	2	copy fasta	ZBTB10	chr8	80481226	80531265