JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZBTB10_chr8_80481226_80531265	0/0	t0009	7337	4	4	0	0	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0010	7328	3	3	0	0	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0011	7323	3	0	0	3	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0012	7323	3	0	2	0	0	1	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0013	7326	3	0	1	2	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0014	7328	2	2	0	0	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0015	7328	2	2	0	0	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0016	7328	2	2	0	0	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0017	7323	2	2	0	0	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0018	7323	2	0	0	2	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0019	7326	2	0	0	2	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0020	7337	2	1	1	0	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0021	7337	2	2	0	0	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0022	7329	1	1	0	0	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0023	7323	1	0	0	1	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0024	7323	1	0	0	1	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0025	7323	1	0	0	0	0	1	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0026	7328	1	0	0	1	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0027	7328	1	1	0	0	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0028	7328	1	0	0	0	0	1	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0029	7328	1	0	0	0	0	1	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0030	7328	1	0	0	1	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0031	7328	1	0	1	0	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0032	7318	1	0	0	0	0	1	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0033	7328	1	1	0	0	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0034	7328	1	1	0	0	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0035	7329	1	0	0	1	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0036	7329	1	0	0	1	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0037	7329	1	1	0	0	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0038	7328	1	0	1	0	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0039	7323	1	1	0	0	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0040	7323	1	0	0	1	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0041	7323	1	0	0	1	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0042	7323	1	0	0	1	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0043	7323	1	1	0	0	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0044	7322	1	1	0	0	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0045	7323	1	0	1	0	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0046	7329	1	1	0	0	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0047	7329	1	1	0	0	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0048	7329	1	1	0	0	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0049	7332	1	0	1	0	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0050	7323	1	0	0	0	0	1	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB10_chr8_80481226_80531265	0/0	t0051	7326	1	0	0	1	0	0	copy fasta	ZBTB10	chr8	80481226	80531265
ZBTB11_chr3_101643889_101682132	1/1	t0001	2496	310	40	55	178	10	25	copy fasta	ZBTB11	chr3	101643889	101682132
ZBTB11_chr3_101643889_101682132	0/0	t0002	2496	44	9	10	17	3	5	copy fasta	ZBTB11	chr3	101643889	101682132
ZBTB11_chr3_101643889_101682132	0/0	t0003	2496	12	12	0	0	0	0	copy fasta	ZBTB11	chr3	101643889	101682132
ZBTB11_chr3_101643889_101682132	0/0	t0004	2496	7	7	0	0	0	0	copy fasta	ZBTB11	chr3	101643889	101682132
ZBTB11_chr3_101643889_101682132	0/0	t0005	2494	6	6	0	0	0	0	copy fasta	ZBTB11	chr3	101643889	101682132
ZBTB11_chr3_101643889_101682132	0/0	t0006	2496	5	5	0	0	0	0	copy fasta	ZBTB11	chr3	101643889	101682132
ZBTB11_chr3_101643889_101682132	0/0	t0007	2494	5	0	0	2	0	3	copy fasta	ZBTB11	chr3	101643889	101682132