JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZBTB11_chr3_101643889_101682132	0/0	t0008	2492	3	3	0	0	0	0	copy fasta	ZBTB11	chr3	101643889	101682132
ZBTB11_chr3_101643889_101682132	0/0	t0009	2496	3	3	0	0	0	0	copy fasta	ZBTB11	chr3	101643889	101682132
ZBTB11_chr3_101643889_101682132	0/0	t0010	2496	3	0	0	3	0	0	copy fasta	ZBTB11	chr3	101643889	101682132
ZBTB11_chr3_101643889_101682132	0/0	t0011	2496	3	0	0	3	0	0	copy fasta	ZBTB11	chr3	101643889	101682132
ZBTB11_chr3_101643889_101682132	0/0	t0012	2496	2	2	0	0	0	0	copy fasta	ZBTB11	chr3	101643889	101682132
ZBTB11_chr3_101643889_101682132	0/0	t0013	2496	1	1	0	0	0	0	copy fasta	ZBTB11	chr3	101643889	101682132
ZBTB11_chr3_101643889_101682132	0/0	t0014	2496	1	0	0	0	0	1	copy fasta	ZBTB11	chr3	101643889	101682132
ZBTB11_chr3_101643889_101682132	0/0	t0015	2496	1	0	0	0	0	1	copy fasta	ZBTB11	chr3	101643889	101682132
ZBTB11_chr3_101643889_101682132	0/0	t0016	2496	1	0	0	0	0	1	copy fasta	ZBTB11	chr3	101643889	101682132
ZBTB11_chr3_101643889_101682132	0/0	t0017	2496	1	0	0	1	0	0	copy fasta	ZBTB11	chr3	101643889	101682132
ZBTB11_chr3_101643889_101682132	0/0	t0018	2496	1	1	0	0	0	0	copy fasta	ZBTB11	chr3	101643889	101682132
ZBTB11_chr3_101643889_101682132	0/0	t0019	2496	1	0	0	0	1	0	copy fasta	ZBTB11	chr3	101643889	101682132
ZBTB11_chr3_101643889_101682132	0/0	t0020	2496	1	0	1	0	0	0	copy fasta	ZBTB11	chr3	101643889	101682132
ZBTB11_chr3_101643889_101682132	0/0	t0021	2496	1	1	0	0	0	0	copy fasta	ZBTB11	chr3	101643889	101682132
ZBTB11_chr3_101643889_101682132	0/0	t0022	2496	1	1	0	0	0	0	copy fasta	ZBTB11	chr3	101643889	101682132
ZBTB11_chr3_101643889_101682132	0/0	t0023	2496	1	1	0	0	0	0	copy fasta	ZBTB11	chr3	101643889	101682132
ZBTB12_chr6_31894613_31907086	0/1	t0001	584	245	69	51	93	11	20	copy fasta	ZBTB12	chr6	31894613	31907086
ZBTB12_chr6_31894613_31907086	0/0	t0002	584	85	5	14	51	5	10	copy fasta	ZBTB12	chr6	31894613	31907086
ZBTB12_chr6_31894613_31907086	0/0	t0003	586	26	14	5	0	1	6	copy fasta	ZBTB12	chr6	31894613	31907086
ZBTB12_chr6_31894613_31907086	0/0	t0004	584	17	0	7	10	0	0	copy fasta	ZBTB12	chr6	31894613	31907086
ZBTB12_chr6_31894613_31907086	0/0	t0005	585	15	2	2	5	0	6	copy fasta	ZBTB12	chr6	31894613	31907086
ZBTB12_chr6_31894613_31907086	0/0	t0006	584	14	0	3	10	1	0	copy fasta	ZBTB12	chr6	31894613	31907086
ZBTB12_chr6_31894613_31907086	0/0	t0007	585	4	0	0	1	0	3	copy fasta	ZBTB12	chr6	31894613	31907086
ZBTB12_chr6_31894613_31907086	0/0	t0008	585	3	0	1	2	0	0	copy fasta	ZBTB12	chr6	31894613	31907086
ZBTB12_chr6_31894613_31907086	0/0	t0009	584	2	1	1	0	0	0	copy fasta	ZBTB12	chr6	31894613	31907086
ZBTB12_chr6_31894613_31907086	0/0	t0010	584	2	0	0	2	0	0	copy fasta	ZBTB12	chr6	31894613	31907086
ZBTB12_chr6_31894613_31907086	0/0	t0011	557	2	0	0	2	0	0	copy fasta	ZBTB12	chr6	31894613	31907086
ZBTB12_chr6_31894613_31907086	0/0	t0012	584	1	1	0	0	0	0	copy fasta	ZBTB12	chr6	31894613	31907086
ZBTB12_chr6_31894613_31907086	0/0	t0013	584	1	1	0	0	0	0	copy fasta	ZBTB12	chr6	31894613	31907086
ZBTB12_chr6_31894613_31907086	0/0	t0014	584	1	1	0	0	0	0	copy fasta	ZBTB12	chr6	31894613	31907086
ZBTB12_chr6_31894613_31907086	0/0	t0015	584	1	0	0	0	0	1	copy fasta	ZBTB12	chr6	31894613	31907086
ZBTB14_chr18_5284022_5300726	0/0	t0001	2022	120	6	20	85	0	9	copy fasta	ZBTB14	chr18	5284022	5300726
ZBTB14_chr18_5284022_5300726	0/0	t0002	2022	118	26	29	40	12	11	copy fasta	ZBTB14	chr18	5284022	5300726
ZBTB14_chr18_5284022_5300726	0/1	t0003	2023	95	27	18	24	4	21	copy fasta	ZBTB14	chr18	5284022	5300726
ZBTB14_chr18_5284022_5300726	0/0	t0004	2021	11	11	0	0	0	0	copy fasta	ZBTB14	chr18	5284022	5300726
ZBTB14_chr18_5284022_5300726	0/0	t0005	2023	7	6	1	0	0	0	copy fasta	ZBTB14	chr18	5284022	5300726
ZBTB14_chr18_5284022_5300726	0/0	t0006	2022	4	0	0	4	0	0	copy fasta	ZBTB14	chr18	5284022	5300726
ZBTB14_chr18_5284022_5300726	0/0	t0007	2023	4	4	0	0	0	0	copy fasta	ZBTB14	chr18	5284022	5300726
ZBTB14_chr18_5284022_5300726	0/0	t0008	2023	3	3	0	0	0	0	copy fasta	ZBTB14	chr18	5284022	5300726
ZBTB14_chr18_5284022_5300726	0/0	t0009	2022	3	0	0	3	0	0	copy fasta	ZBTB14	chr18	5284022	5300726
ZBTB14_chr18_5284022_5300726	0/0	t0010	2023	3	3	0	0	0	0	copy fasta	ZBTB14	chr18	5284022	5300726
ZBTB14_chr18_5284022_5300726	0/0	t0011	2023	3	3	0	0	0	0	copy fasta	ZBTB14	chr18	5284022	5300726
ZBTB14_chr18_5284022_5300726	0/0	t0012	2022	2	2	0	0	0	0	copy fasta	ZBTB14	chr18	5284022	5300726
ZBTB14_chr18_5284022_5300726	0/0	t0013	2022	2	0	0	2	0	0	copy fasta	ZBTB14	chr18	5284022	5300726
ZBTB14_chr18_5284022_5300726	0/0	t0014	2023	2	2	0	0	0	0	copy fasta	ZBTB14	chr18	5284022	5300726
ZBTB14_chr18_5284022_5300726	0/0	t0015	2022	2	0	0	2	0	0	copy fasta	ZBTB14	chr18	5284022	5300726
ZBTB14_chr18_5284022_5300726	0/0	t0016	2022	1	1	0	0	0	0	copy fasta	ZBTB14	chr18	5284022	5300726
ZBTB14_chr18_5284022_5300726	0/0	t0017	2021	1	0	0	1	0	0	copy fasta	ZBTB14	chr18	5284022	5300726
ZBTB14_chr18_5284022_5300726	0/0	t0018	2022	1	0	1	0	0	0	copy fasta	ZBTB14	chr18	5284022	5300726
ZBTB14_chr18_5284022_5300726	0/0	t0019	2022	1	1	0	0	0	0	copy fasta	ZBTB14	chr18	5284022	5300726