Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ACTN4_chr19_38642649_38736589	0/0	t0029	2215	1	0	1	0	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0030	2256	1	1	0	0	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0031	2256	1	0	1	0	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0032	2256	1	0	1	0	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0033	2256	1	1	0	0	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0034	2255	1	0	0	0	0	1	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0035	2255	1	0	0	1	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0036	2255	1	0	1	0	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0037	2255	1	0	0	1	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0038	2255	1	0	0	1	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0039	2255	1	0	0	1	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0040	2255	1	0	1	0	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0041	2255	1	0	0	1	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0042	2255	1	1	0	0	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0043	2255	1	1	0	0	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0044	2254	1	0	0	0	0	1	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0045	2254	1	1	0	0	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0046	2255	1	0	0	1	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0047	2251	1	0	1	0	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0048	2255	1	0	0	0	0	1	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0049	2255	1	1	0	0	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0050	2255	1	0	0	1	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0051	2246	1	0	1	0	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTN4_chr19_38642649_38736589	0/0	t0052	2255	1	0	1	0	0	0	copy fasta	ACTN4	chr19	38642649	38736589
ACTR10_chr14_58195149_58240636	0/1	t0001	1156	91	8	16	43	11	12	copy fasta	ACTR10	chr14	58195149	58240636
ACTR10_chr14_58195149_58240636	1/0	t0002	1155	81	3	16	47	1	13	copy fasta	ACTR10	chr14	58195149	58240636
ACTR10_chr14_58195149_58240636	0/0	t0003	1154	53	20	19	1	3	10	copy fasta	ACTR10	chr14	58195149	58240636
ACTR10_chr14_58195149_58240636	0/0	t0004	1156	19	2	1	14	0	2	copy fasta	ACTR10	chr14	58195149	58240636
ACTR10_chr14_58195149_58240636	0/0	t0005	1154	16	11	3	0	1	1	copy fasta	ACTR10	chr14	58195149	58240636
ACTR10_chr14_58195149_58240636	0/0	t0006	1156	11	11	0	0	0	0	copy fasta	ACTR10	chr14	58195149	58240636
ACTR10_chr14_58195149_58240636	0/0	t0007	1157	9	0	1	5	0	3	copy fasta	ACTR10	chr14	58195149	58240636
ACTR10_chr14_58195149_58240636	0/0	t0008	1154	6	6	0	0	0	0	copy fasta	ACTR10	chr14	58195149	58240636
ACTR10_chr14_58195149_58240636	0/0	t0009	1155	5	3	1	0	0	1	copy fasta	ACTR10	chr14	58195149	58240636
ACTR10_chr14_58195149_58240636	0/0	t0010	1153	3	3	0	0	0	0	copy fasta	ACTR10	chr14	58195149	58240636
ACTR10_chr14_58195149_58240636	0/0	t0011	1155	3	0	3	0	0	0	copy fasta	ACTR10	chr14	58195149	58240636
ACTR10_chr14_58195149_58240636	0/0	t0012	1156	2	0	0	2	0	0	copy fasta	ACTR10	chr14	58195149	58240636
ACTR10_chr14_58195149_58240636	0/0	t0013	1153	2	2	0	0	0	0	copy fasta	ACTR10	chr14	58195149	58240636
ACTR10_chr14_58195149_58240636	0/0	t0014	1154	2	2	0	0	0	0	copy fasta	ACTR10	chr14	58195149	58240636
ACTR10_chr14_58195149_58240636	0/0	t0015	1154	2	0	0	2	0	0	copy fasta	ACTR10	chr14	58195149	58240636
ACTR10_chr14_58195149_58240636	0/0	t0016	1155	2	0	2	0	0	0	copy fasta	ACTR10	chr14	58195149	58240636
ACTR10_chr14_58195149_58240636	0/0	t0017	1153	2	2	0	0	0	0	copy fasta	ACTR10	chr14	58195149	58240636
ACTR10_chr14_58195149_58240636	0/0	t0018	1157	2	2	0	0	0	0	copy fasta	ACTR10	chr14	58195149	58240636
ACTR10_chr14_58195149_58240636	0/0	t0019	1158	2	0	0	2	0	0	copy fasta	ACTR10	chr14	58195149	58240636
ACTR10_chr14_58195149_58240636	0/0	t0020	1158	1	1	0	0	0	0	copy fasta	ACTR10	chr14	58195149	58240636
ACTR10_chr14_58195149_58240636	0/0	t0021	1156	1	0	0	1	0	0	copy fasta	ACTR10	chr14	58195149	58240636
ACTR10_chr14_58195149_58240636	0/0	t0022	1154	1	1	0	0	0	0	copy fasta	ACTR10	chr14	58195149	58240636
ACTR10_chr14_58195149_58240636	0/0	t0023	1154	1	0	1	0	0	0	copy fasta	ACTR10	chr14	58195149	58240636
ACTR10_chr14_58195149_58240636	0/0	t0024	1155	1	0	0	1	0	0	copy fasta	ACTR10	chr14	58195149	58240636
ACTR10_chr14_58195149_58240636	0/0	t0025	1156	1	0	1	0	0	0	copy fasta	ACTR10	chr14	58195149	58240636
ACTR10_chr14_58195149_58240636	0/0	t0026	1157	1	1	0	0	0	0	copy fasta	ACTR10	chr14	58195149	58240636