JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C1QL1_chr17_44954693_44973303	0/0	t0009	751	1	0	1	0	0	0	copy fasta	C1QL1	chr17	44954693	44973303
C1QL1_chr17_44954693_44973303	0/0	t0010	751	1	1	0	0	0	0	copy fasta	C1QL1	chr17	44954693	44973303
C1QL2_chr2_119151243_119163751	0/1	t0001	1042	198	37	42	76	12	30	copy fasta	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	0/0	t0002	1042	132	8	18	89	5	12	copy fasta	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	0/0	t0003	1042	30	18	6	5	1	0	copy fasta	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	1/0	t0004	1042	30	19	0	5	0	5	copy fasta	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	0/0	t0005	1042	4	1	0	2	0	1	copy fasta	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	0/0	t0006	1042	3	3	0	0	0	0	copy fasta	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	0/0	t0007	1042	3	3	0	0	0	0	copy fasta	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	0/0	t0008	1042	3	3	0	0	0	0	copy fasta	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	0/0	t0009	1042	3	3	0	0	0	0	copy fasta	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	0/0	t0010	1042	2	2	0	0	0	0	copy fasta	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	0/0	t0011	1042	1	0	0	0	0	1	copy fasta	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	0/0	t0012	1042	1	1	0	0	0	0	copy fasta	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	0/0	t0013	1042	1	0	0	0	0	1	copy fasta	C1QL2	chr2	119151243	119163751
C1QL2_chr2_119151243_119163751	0/0	t0014	1042	1	0	0	1	0	0	copy fasta	C1QL2	chr2	119151243	119163751
C1QL3_chr10_16508734_16526879	0/0	t0001	1609	178	63	31	70	3	11	copy fasta	C1QL3	chr10	16508734	16526879
C1QL3_chr10_16508734_16526879	1/0	t0002	1609	174	17	28	103	8	17	copy fasta	C1QL3	chr10	16508734	16526879
C1QL3_chr10_16508734_16526879	0/0	t0003	1611	86	14	21	34	4	13	copy fasta	C1QL3	chr10	16508734	16526879
C1QL3_chr10_16508734_16526879	0/1	t0004	1611	8	0	4	0	1	2	copy fasta	C1QL3	chr10	16508734	16526879
C1QL3_chr10_16508734_16526879	0/0	t0005	1609	2	2	0	0	0	0	copy fasta	C1QL3	chr10	16508734	16526879
C1QL3_chr10_16508734_16526879	0/0	t0006	1609	2	1	0	1	0	0	copy fasta	C1QL3	chr10	16508734	16526879
C1QL3_chr10_16508734_16526879	0/0	t0007	1611	2	0	0	2	0	0	copy fasta	C1QL3	chr10	16508734	16526879
C1QL3_chr10_16508734_16526879	0/0	t0008	1611	1	0	0	1	0	0	copy fasta	C1QL3	chr10	16508734	16526879
C1QL3_chr10_16508734_16526879	0/0	t0009	1609	1	0	0	1	0	0	copy fasta	C1QL3	chr10	16508734	16526879
C1QL3_chr10_16508734_16526879	0/0	t0010	1609	1	0	0	1	0	0	copy fasta	C1QL3	chr10	16508734	16526879
C1QL3_chr10_16508734_16526879	0/0	t0011	1609	1	0	0	1	0	0	copy fasta	C1QL3	chr10	16508734	16526879
C1QL3_chr10_16508734_16526879	0/0	t0012	1609	1	0	0	1	0	0	copy fasta	C1QL3	chr10	16508734	16526879
C1QL3_chr10_16508734_16526879	0/0	t0013	1609	1	1	0	0	0	0	copy fasta	C1QL3	chr10	16508734	16526879
C1QL3_chr10_16508734_16526879	0/0	t0014	1609	1	0	0	0	0	1	copy fasta	C1QL3	chr10	16508734	16526879
C1QL3_chr10_16508734_16526879	0/0	t0015	1609	1	0	0	1	0	0	copy fasta	C1QL3	chr10	16508734	16526879
C1QL4_chr12_49327409_49342188	1/1	t0001	1357	222	51	40	84	11	34	copy fasta	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	t0002	1358	19	10	6	0	1	2	copy fasta	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	t0003	1358	16	8	1	6	1	0	copy fasta	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	t0004	1358	7	5	2	0	0	0	copy fasta	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	t0005	1357	6	5	0	0	0	1	copy fasta	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	t0006	1361	5	4	1	0	0	0	copy fasta	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	t0007	1357	4	4	0	0	0	0	copy fasta	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	t0008	1357	4	0	0	4	0	0	copy fasta	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	t0009	1357	3	3	0	0	0	0	copy fasta	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	t0010	1357	3	0	2	0	0	1	copy fasta	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	t0011	1358	2	2	0	0	0	0	copy fasta	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	t0012	1358	2	0	0	0	1	1	copy fasta	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	t0013	1357	1	0	0	1	0	0	copy fasta	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	t0014	1357	1	0	0	0	0	1	copy fasta	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	t0015	1357	1	0	1	0	0	0	copy fasta	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	t0016	1357	1	0	1	0	0	0	copy fasta	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	t0017	1358	1	1	0	0	0	0	copy fasta	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	t0018	1358	1	1	0	0	0	0	copy fasta	C1QL4	chr12	49327409	49342188
C1QL4_chr12_49327409_49342188	0/0	t0019	1357	1	0	0	1	0	0	copy fasta	C1QL4	chr12	49327409	49342188