JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZBTB14_chr18_5284022_5300726	0/0	t0020	2022	1	0	0	0	0	1	copy fasta	ZBTB14	chr18	5284022	5300726
ZBTB14_chr18_5284022_5300726	0/0	t0021	2022	1	0	0	1	0	0	copy fasta	ZBTB14	chr18	5284022	5300726
ZBTB14_chr18_5284022_5300726	0/0	t0022	2022	1	0	1	0	0	0	copy fasta	ZBTB14	chr18	5284022	5300726
ZBTB14_chr18_5284022_5300726	0/0	t0023	2023	1	0	1	0	0	0	copy fasta	ZBTB14	chr18	5284022	5300726
ZBTB14_chr18_5284022_5300726	0/0	t0024	2023	1	1	0	0	0	0	copy fasta	ZBTB14	chr18	5284022	5300726
ZBTB14_chr18_5284022_5300726	0/0	t0025	2023	1	0	1	0	0	0	copy fasta	ZBTB14	chr18	5284022	5300726
ZBTB14_chr18_5284022_5300726	0/0	t0026	2022	1	1	0	0	0	0	copy fasta	ZBTB14	chr18	5284022	5300726
ZBTB14_chr18_5284022_5300726	1/0	t0027	2023	1	0	0	0	0	0	copy fasta	ZBTB14	chr18	5284022	5300726
ZBTB14_chr18_5284022_5300726	0/0	t0028	2022	1	1	0	0	0	0	copy fasta	ZBTB14	chr18	5284022	5300726
ZBTB16_chr11_114054711_114261765	0/0	t0001	6475	35	9	17	3	2	4	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0002	6474	34	4	2	24	0	4	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/1	t0003	6475	16	0	1	11	2	1	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0004	6465	9	9	0	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0005	6474	8	8	0	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0006	6474	8	0	3	3	0	2	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0007	6474	6	0	0	3	1	2	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0008	6476	6	0	6	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0009	6473	6	0	3	1	0	2	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0010	6474	4	0	0	4	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0011	6471	4	4	0	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0012	6472	4	0	0	4	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0013	6474	3	3	0	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0014	6474	3	0	1	2	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0015	6474	3	0	2	0	0	1	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0016	6475	3	0	3	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0017	6475	3	1	2	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0018	6474	2	0	0	2	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0019	6474	2	0	0	1	0	1	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0020	6475	2	0	0	2	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0021	6477	2	0	1	0	0	1	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0022	6479	2	0	0	0	0	2	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0023	6476	2	2	0	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	1/0	t0024	6473	2	1	0	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0025	6474	2	0	0	2	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0026	6478	2	2	0	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0027	6475	2	2	0	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0028	6465	2	2	0	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0029	6473	2	0	2	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0030	6475	2	0	1	0	0	1	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0031	6476	2	2	0	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0032	6474	2	2	0	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0033	6475	2	2	0	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0034	6476	2	2	0	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0035	6474	2	1	0	1	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0036	6466	2	0	2	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0037	6476	2	1	0	0	1	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0038	6474	2	0	0	2	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0039	6474	1	0	1	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0040	6476	1	1	0	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0041	6467	1	1	0	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765