JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZBTB16_chr11_114054711_114261765	0/0	t0092	6475	1	0	1	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0093	6476	1	1	0	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0094	6476	1	1	0	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0095	6475	1	1	0	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0096	6477	1	1	0	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0097	6474	1	0	1	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0098	6474	1	0	0	1	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0099	6476	1	1	0	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0100	6466	1	1	0	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0101	6476	1	1	0	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0102	6474	1	0	1	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0103	6473	1	0	1	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0104	6474	1	1	0	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0105	6457	1	0	1	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0106	6478	1	1	0	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0107	6466	1	1	0	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0108	6474	1	0	1	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0109	6478	1	0	1	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0110	6475	1	0	1	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0111	6474	1	0	0	0	0	1	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0112	6475	1	0	0	1	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0113	6475	1	0	0	1	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0114	6475	1	1	0	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0115	6477	1	1	0	0	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0116	6475	1	0	0	1	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0117	6474	1	0	0	1	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0118	6475	1	0	0	1	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB16_chr11_114054711_114261765	0/0	t0119	6474	1	0	0	1	0	0	copy fasta	ZBTB16	chr11	114054711	114261765
ZBTB17_chr1_15936869_15981101	1/1	t0001	309	318	86	68	114	14	34	copy fasta	ZBTB17	chr1	15936869	15981101
ZBTB17_chr1_15936869_15981101	0/0	t0002	309	2	2	0	0	0	0	copy fasta	ZBTB17	chr1	15936869	15981101
ZBTB18_chr1_244046283_244062476	0/1	t0001	2256	273	57	54	113	15	33	copy fasta	ZBTB18	chr1	244046283	244062476
ZBTB18_chr1_244046283_244062476	0/0	t0002	2252	89	10	16	58	2	3	copy fasta	ZBTB18	chr1	244046283	244062476
ZBTB18_chr1_244046283_244062476	0/0	t0003	2255	14	13	1	0	0	0	copy fasta	ZBTB18	chr1	244046283	244062476
ZBTB18_chr1_244046283_244062476	0/0	t0004	2252	12	0	6	6	0	0	copy fasta	ZBTB18	chr1	244046283	244062476
ZBTB18_chr1_244046283_244062476	0/0	t0005	2255	6	6	0	0	0	0	copy fasta	ZBTB18	chr1	244046283	244062476
ZBTB18_chr1_244046283_244062476	0/0	t0006	2256	4	0	0	4	0	0	copy fasta	ZBTB18	chr1	244046283	244062476
ZBTB18_chr1_244046283_244062476	0/0	t0007	2255	3	3	0	0	0	0	copy fasta	ZBTB18	chr1	244046283	244062476
ZBTB18_chr1_244046283_244062476	0/0	t0008	2254	3	0	1	1	0	1	copy fasta	ZBTB18	chr1	244046283	244062476
ZBTB18_chr1_244046283_244062476	0/0	t0009	2256	3	2	1	0	0	0	copy fasta	ZBTB18	chr1	244046283	244062476
ZBTB18_chr1_244046283_244062476	0/0	t0010	2248	2	0	0	2	0	0	copy fasta	ZBTB18	chr1	244046283	244062476
ZBTB18_chr1_244046283_244062476	0/0	t0011	2255	2	2	0	0	0	0	copy fasta	ZBTB18	chr1	244046283	244062476
ZBTB18_chr1_244046283_244062476	0/0	t0012	2256	1	0	0	0	0	1	copy fasta	ZBTB18	chr1	244046283	244062476
ZBTB18_chr1_244046283_244062476	0/0	t0013	2252	1	0	0	1	0	0	copy fasta	ZBTB18	chr1	244046283	244062476
ZBTB18_chr1_244046283_244062476	0/0	t0014	2252	1	0	0	1	0	0	copy fasta	ZBTB18	chr1	244046283	244062476
ZBTB18_chr1_244046283_244062476	0/0	t0015	2256	1	0	1	0	0	0	copy fasta	ZBTB18	chr1	244046283	244062476
ZBTB18_chr1_244046283_244062476	0/0	t0016	2252	1	0	0	1	0	0	copy fasta	ZBTB18	chr1	244046283	244062476
ZBTB18_chr1_244046283_244062476	1/0	t0017	2256	1	0	0	0	0	0	copy fasta	ZBTB18	chr1	244046283	244062476
ZBTB18_chr1_244046283_244062476	0/0	t0018	2256	1	0	0	1	0	0	copy fasta	ZBTB18	chr1	244046283	244062476
ZBTB18_chr1_244046283_244062476	0/0	t0019	2256	1	1	0	0	0	0	copy fasta	ZBTB18	chr1	244046283	244062476
ZBTB18_chr1_244046283_244062476	0/0	t0020	2256	1	0	0	0	1	0	copy fasta	ZBTB18	chr1	244046283	244062476