JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZBTB18_chr1_244046283_244062476	0/0	t0021	2256	1	0	0	1	0	0	copy fasta	ZBTB18	chr1	244046283	244062476
ZBTB18_chr1_244046283_244062476	0/0	t0022	2256	1	1	0	0	0	0	copy fasta	ZBTB18	chr1	244046283	244062476
ZBTB18_chr1_244046283_244062476	0/0	t0023	2256	1	0	0	1	0	0	copy fasta	ZBTB18	chr1	244046283	244062476
ZBTB18_chr1_244046283_244062476	0/0	t0024	2256	1	0	0	1	0	0	copy fasta	ZBTB18	chr1	244046283	244062476
ZBTB18_chr1_244046283_244062476	0/0	t0025	2256	1	0	1	0	0	0	copy fasta	ZBTB18	chr1	244046283	244062476
ZBTB18_chr1_244046283_244062476	0/0	t0026	2256	1	0	1	0	0	0	copy fasta	ZBTB18	chr1	244046283	244062476
ZBTB18_chr1_244046283_244062476	0/0	t0027	2255	1	1	0	0	0	0	copy fasta	ZBTB18	chr1	244046283	244062476
ZBTB18_chr1_244046283_244062476	0/0	t0028	2256	1	1	0	0	0	0	copy fasta	ZBTB18	chr1	244046283	244062476
ZBTB18_chr1_244046283_244062476	0/0	t0029	2255	1	1	0	0	0	0	copy fasta	ZBTB18	chr1	244046283	244062476
ZBTB18_chr1_244046283_244062476	0/0	t0030	2256	1	0	0	1	0	0	copy fasta	ZBTB18	chr1	244046283	244062476
ZBTB1_chr14_64499770_64529951	1/0	t0001	1501	303	72	62	121	10	37	copy fasta	ZBTB1	chr14	64499770	64529951
ZBTB1_chr14_64499770_64529951	0/0	t0002	1503	24	1	1	12	0	10	copy fasta	ZBTB1	chr14	64499770	64529951
ZBTB1_chr14_64499770_64529951	0/0	t0003	1502	20	10	7	2	0	1	copy fasta	ZBTB1	chr14	64499770	64529951
ZBTB1_chr14_64499770_64529951	0/1	t0004	1501	7	3	3	0	0	0	copy fasta	ZBTB1	chr14	64499770	64529951
ZBTB1_chr14_64499770_64529951	0/0	t0005	1498	6	6	0	0	0	0	copy fasta	ZBTB1	chr14	64499770	64529951
ZBTB1_chr14_64499770_64529951	0/0	t0006	1497	5	0	0	5	0	0	copy fasta	ZBTB1	chr14	64499770	64529951
ZBTB1_chr14_64499770_64529951	0/0	t0007	1500	1	0	0	1	0	0	copy fasta	ZBTB1	chr14	64499770	64529951
ZBTB1_chr14_64499770_64529951	0/0	t0008	1501	1	1	0	0	0	0	copy fasta	ZBTB1	chr14	64499770	64529951
ZBTB1_chr14_64499770_64529951	0/0	t0009	1501	1	0	0	1	0	0	copy fasta	ZBTB1	chr14	64499770	64529951
ZBTB1_chr14_64499770_64529951	0/0	t0010	1501	1	1	0	0	0	0	copy fasta	ZBTB1	chr14	64499770	64529951
ZBTB1_chr14_64499770_64529951	0/0	t0011	1501	1	0	1	0	0	0	copy fasta	ZBTB1	chr14	64499770	64529951
ZBTB20_chr3_114309500_115152288	0/0	t0001	25284	3	2	0	0	0	1	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0002	25276	2	1	1	0	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0003	25281	2	0	2	0	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0004	25278	2	2	0	0	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0005	25279	2	2	0	0	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0006	25281	1	1	0	0	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0007	25289	1	1	0	0	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0008	25290	1	0	1	0	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0009	25290	1	0	0	0	0	1	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0010	25286	1	1	0	0	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0011	25273	1	1	0	0	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/1	t0012	25292	1	0	0	0	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0013	25295	1	0	0	0	0	1	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0014	25291	1	0	1	0	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0015	25292	1	0	1	0	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0016	25288	1	0	1	0	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0017	25289	1	0	0	0	0	1	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0018	25290	1	0	1	0	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0019	25294	1	1	0	0	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0020	25285	1	0	1	0	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0021	25270	1	1	0	0	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0022	25270	1	1	0	0	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0023	25279	1	1	0	0	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0024	25275	1	1	0	0	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0025	25284	1	1	0	0	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0026	25284	1	1	0	0	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0027	25282	1	1	0	0	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0028	25280	1	1	0	0	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0029	25268	1	1	0	0	0	0	copy fasta	ZBTB20	chr3	114309500	115152288