JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	SAS	tseq	genename	chr	start	end
ZBTB20_chr3_114309500_115152288	0/0	t0030	25286	1	1	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0031	25285	1	1	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0032	25281	1	1	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0033	25272	1	1	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0034	25273	1	1	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0035	25283	1	0	1	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0036	25273	1	1	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0037	25267	1	1	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0038	25279	1	1	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0039	25269	1	1	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0040	25281	1	1	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0041	25279	1	1	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0042	25295	1	0	0	1	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0043	25280	1	1	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0044	25278	1	0	1	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0045	25279	1	1	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0046	25281	1	1	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0047	25280	1	1	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0048	25278	1	1	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	1/0	t0049	25278	1	0	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0050	25274	1	1	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0051	25271	1	1	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0052	25276	1	1	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0053	25288	1	1	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0054	25286	1	1	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0055	25287	1	0	1	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0056	25281	1	1	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0057	25288	1	1	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0058	25286	1	1	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0059	25277	1	1	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0060	25277	1	1	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0061	25282	1	0	1	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0062	25276	1	0	1	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0063	25282	1	1	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0064	25285	1	0	1	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0065	25283	1	0	1	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0066	25282	1	1	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0067	25280	1	1	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0068	25288	1	0	1	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0069	25279	1	1	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0070	25279	1	1	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0071	25280	1	0	0	1	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0072	25269	1	0	0	1	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0073	25265	1	0	1	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0074	25268	1	1	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0075	25267	1	1	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0076	25247	1	1	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0077	25260	1	1	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0078	25270	1	1	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0079	25288	1	1	0	0	copy fasta	ZBTB20	chr3	114309500	115152288