JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZBTB20_chr3_114309500_115152288	0/0	t0080	25278	1	1	0	0	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0081	25291	1	0	0	0	0	1	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB20_chr3_114309500_115152288	0/0	t0082	25267	1	1	0	0	0	0	copy fasta	ZBTB20	chr3	114309500	115152288
ZBTB21_chr21_41981831_42015360	1/0	t0001	4252	78	4	9	58	2	4	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0002	4257	58	18	9	16	2	13	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0003	4257	53	0	1	47	0	5	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0004	4257	33	16	6	5	3	3	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0005	4257	30	0	6	19	1	4	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0006	4257	29	15	10	2	1	1	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0007	4257	13	0	8	0	3	2	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0008	4251	8	8	0	0	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0009	4257	6	0	0	6	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0010	4257	5	5	0	0	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/1	t0011	4258	5	0	2	1	0	1	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0012	4256	4	0	2	0	1	1	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0013	4255	4	4	0	0	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0014	4257	4	4	0	0	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0015	4258	4	4	0	0	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0016	4252	3	3	0	0	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0017	4253	3	0	0	3	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0018	4257	3	0	2	0	1	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0019	4257	3	0	1	0	1	1	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0020	4258	2	0	1	0	1	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0021	4252	2	0	0	2	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0022	4257	2	2	0	0	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0023	4252	2	2	0	0	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0024	4257	2	0	2	0	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0025	4258	2	1	0	0	0	1	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0026	4257	2	1	1	0	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0027	4252	2	0	0	2	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0028	4256	2	0	2	0	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0029	4257	2	2	0	0	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0030	4257	2	0	0	2	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0031	4257	2	0	0	2	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0032	4257	2	0	0	2	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0033	4252	1	0	1	0	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0034	4257	1	0	0	1	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0035	4257	1	1	0	0	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0036	4257	1	0	1	0	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0037	4257	1	0	0	0	0	1	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0038	4252	1	0	1	0	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0039	4253	1	0	0	1	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0040	4258	1	0	1	0	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0041	4258	1	0	1	0	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0042	4258	1	0	0	0	0	1	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0043	4252	1	0	0	0	0	1	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0044	4251	1	1	0	0	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0045	4257	1	0	1	0	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0046	4257	1	0	0	0	0	1	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0047	4252	1	0	0	1	0	0	copy fasta	ZBTB21	chr21	41981831	42015360