JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZBTB21_chr21_41981831_42015360	0/0	t0048	4252	1	1	0	0	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0049	4257	1	1	0	0	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0050	4256	1	1	0	0	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0051	4256	1	1	0	0	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0052	4257	1	0	0	0	0	1	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0053	4252	1	0	1	0	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0054	4257	1	1	0	0	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0055	4257	1	0	0	0	0	1	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0056	4257	1	0	0	0	0	1	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0057	4257	1	0	1	0	0	0	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB21_chr21_41981831_42015360	0/0	t0058	4257	1	0	0	0	0	1	copy fasta	ZBTB21	chr21	41981831	42015360
ZBTB22_chr6_33309418_33322744	0/1	t0001	756	189	36	34	97	5	16	copy fasta	ZBTB22	chr6	33309418	33322744
ZBTB22_chr6_33309418_33322744	0/0	t0002	756	133	43	20	52	4	14	copy fasta	ZBTB22	chr6	33309418	33322744
ZBTB22_chr6_33309418_33322744	0/0	t0003	756	45	3	12	21	1	8	copy fasta	ZBTB22	chr6	33309418	33322744
ZBTB22_chr6_33309418_33322744	0/0	t0004	756	10	5	1	2	0	2	copy fasta	ZBTB22	chr6	33309418	33322744
ZBTB22_chr6_33309418_33322744	0/0	t0005	756	4	0	0	4	0	0	copy fasta	ZBTB22	chr6	33309418	33322744
ZBTB22_chr6_33309418_33322744	0/0	t0006	756	4	4	0	0	0	0	copy fasta	ZBTB22	chr6	33309418	33322744
ZBTB22_chr6_33309418_33322744	0/0	t0007	756	3	3	0	0	0	0	copy fasta	ZBTB22	chr6	33309418	33322744
ZBTB22_chr6_33309418_33322744	0/0	t0008	756	1	0	0	0	0	1	copy fasta	ZBTB22	chr6	33309418	33322744
ZBTB22_chr6_33309418_33322744	0/0	t0009	756	1	1	0	0	0	0	copy fasta	ZBTB22	chr6	33309418	33322744
ZBTB22_chr6_33309418_33322744	0/0	t0010	756	1	0	1	0	0	0	copy fasta	ZBTB22	chr6	33309418	33322744
ZBTB22_chr6_33309418_33322744	0/0	t0011	756	1	0	0	0	0	1	copy fasta	ZBTB22	chr6	33309418	33322744
ZBTB22_chr6_33309418_33322744	0/0	t0012	756	1	1	0	0	0	0	copy fasta	ZBTB22	chr6	33309418	33322744
ZBTB24_chr6_109457594_109488219	1/1	t0001	3408	150	18	37	70	7	16	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB24_chr6_109457594_109488219	0/0	t0002	3408	136	7	25	82	5	17	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB24_chr6_109457594_109488219	0/0	t0003	3408	32	29	3	0	0	0	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB24_chr6_109457594_109488219	0/0	t0004	3408	21	0	4	15	1	1	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB24_chr6_109457594_109488219	0/0	t0005	3408	17	3	5	5	2	2	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB24_chr6_109457594_109488219	0/0	t0006	3408	10	10	0	0	0	0	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB24_chr6_109457594_109488219	0/0	t0007	3408	9	1	0	8	0	0	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB24_chr6_109457594_109488219	0/0	t0008	3408	6	6	0	0	0	0	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB24_chr6_109457594_109488219	0/0	t0009	3408	5	5	0	0	0	0	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB24_chr6_109457594_109488219	0/0	t0010	3408	4	0	0	4	0	0	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB24_chr6_109457594_109488219	0/0	t0011	3403	3	0	0	3	0	0	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB24_chr6_109457594_109488219	0/0	t0012	3408	3	2	1	0	0	0	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB24_chr6_109457594_109488219	0/0	t0013	3408	2	2	0	0	0	0	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB24_chr6_109457594_109488219	0/0	t0014	3408	2	2	0	0	0	0	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB24_chr6_109457594_109488219	0/0	t0015	3408	1	1	0	0	0	0	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB24_chr6_109457594_109488219	0/0	t0016	3408	1	0	0	1	0	0	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB24_chr6_109457594_109488219	0/0	t0017	3408	1	0	0	1	0	0	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB24_chr6_109457594_109488219	0/0	t0018	3408	1	0	1	0	0	0	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB24_chr6_109457594_109488219	0/0	t0019	3408	1	1	0	0	0	0	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB24_chr6_109457594_109488219	0/0	t0020	3408	1	0	0	1	0	0	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB24_chr6_109457594_109488219	0/0	t0021	3408	1	1	0	0	0	0	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB24_chr6_109457594_109488219	0/0	t0022	3408	1	0	0	0	1	0	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB24_chr6_109457594_109488219	0/0	t0023	3408	1	0	0	1	0	0	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB24_chr6_109457594_109488219	0/0	t0024	3408	1	0	1	0	0	0	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB24_chr6_109457594_109488219	0/0	t0025	3408	1	1	0	0	0	0	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB24_chr6_109457594_109488219	0/0	t0026	3408	1	1	0	0	0	0	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB24_chr6_109457594_109488219	0/0	t0027	3408	1	0	0	0	0	1	copy fasta	ZBTB24	chr6	109457594	109488219