JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZBTB24_chr6_109457594_109488219	0/0	t0028	3408	1	0	0	1	0	0	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB24_chr6_109457594_109488219	0/0	t0029	3408	1	0	0	1	0	0	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB24_chr6_109457594_109488219	0/0	t0030	3408	1	0	0	0	0	1	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB24_chr6_109457594_109488219	0/0	t0031	3408	1	0	0	1	0	0	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB24_chr6_109457594_109488219	0/0	t0032	3408	1	0	0	1	0	0	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB24_chr6_109457594_109488219	0/0	t0033	3408	1	0	1	0	0	0	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB24_chr6_109457594_109488219	0/0	t0034	3408	1	1	0	0	0	0	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB24_chr6_109457594_109488219	0/0	t0035	3408	1	1	0	0	0	0	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB24_chr6_109457594_109488219	0/0	t0036	3408	1	1	0	0	0	0	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB24_chr6_109457594_109488219	0/0	t0037	3408	1	1	0	0	0	0	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB24_chr6_109457594_109488219	0/0	t0038	3408	1	0	0	1	0	0	copy fasta	ZBTB24	chr6	109457594	109488219
ZBTB25_chr14_64473051_64508838	0/0	t0001	9058	68	6	14	36	3	9	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0002	9051	20	1	7	5	3	4	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0003	9058	18	1	2	9	0	6	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0004	9050	17	0	0	17	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0005	9051	15	0	2	11	0	2	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0006	9059	14	1	1	10	0	2	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0007	9059	13	2	6	4	1	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0008	9058	12	0	6	6	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0009	9052	8	0	0	8	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0010	9056	7	7	0	0	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0011	9059	7	0	0	5	0	2	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0012	9059	5	0	0	5	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0013	9059	5	4	1	0	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0014	9051	5	0	0	5	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0015	9061	5	4	1	0	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0016	9052	4	2	0	2	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0017	9059	4	4	0	0	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0018	9059	4	2	2	0	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0019	9059	4	0	2	0	1	1	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0020	9051	3	0	0	3	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/1	t0021	9050	3	0	2	0	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0022	9058	3	3	0	0	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0023	9054	3	3	0	0	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0024	9055	3	3	0	0	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0025	9060	3	0	2	0	1	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0026	9059	3	3	0	0	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0027	9057	3	0	1	1	0	1	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0028	9058	3	2	1	0	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0029	9060	3	0	2	0	0	1	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0030	9058	3	3	0	0	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0031	9051	2	0	0	2	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0032	9052	2	0	2	0	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0033	9058	2	0	0	2	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0034	9058	2	2	0	0	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0035	9061	2	2	0	0	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0036	9060	2	0	0	2	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0037	9059	2	0	0	0	0	2	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0038	9060	2	2	0	0	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0039	9060	2	2	0	0	0	0	copy fasta	ZBTB25	chr14	64473051	64508838