JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZBTB25_chr14_64473051_64508838	0/0	t0090	9058	1	1	0	0	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0091	9058	1	1	0	0	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0092	9055	1	0	0	0	0	1	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0093	9058	1	0	0	1	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	1/0	t0094	9058	1	0	0	0	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0095	9059	1	0	1	0	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0096	9059	1	1	0	0	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0097	9061	1	0	0	0	0	1	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0098	9056	1	1	0	0	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0099	9058	1	1	0	0	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0100	9058	1	1	0	0	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0101	9062	1	1	0	0	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0102	9061	1	1	0	0	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0103	9059	1	0	1	0	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0104	9059	1	1	0	0	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0105	9058	1	0	0	0	0	1	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0106	9061	1	0	1	0	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0107	9058	1	0	0	1	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0108	9054	1	0	0	1	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0109	9050	1	0	0	1	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0110	9058	1	0	0	1	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0111	9059	1	0	0	1	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0112	9057	1	0	0	1	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0113	9057	1	0	0	1	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0114	9057	1	0	0	1	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0115	9058	1	0	0	0	0	1	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0116	9058	1	0	0	1	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0117	9060	1	0	1	0	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0118	9059	1	0	0	1	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0119	9060	1	1	0	0	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0120	9061	1	1	0	0	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0121	9059	1	0	0	0	0	1	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0122	9061	1	0	1	0	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0123	9060	1	1	0	0	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0124	9060	1	0	1	0	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0125	9059	1	0	0	1	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0126	9060	1	0	0	0	0	1	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0127	9061	1	0	0	0	0	1	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0128	9059	1	0	0	0	0	1	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB25_chr14_64473051_64508838	0/0	t0129	9061	1	0	1	0	0	0	copy fasta	ZBTB25	chr14	64473051	64508838
ZBTB26_chr9_122910566_122936512	1/0	t0001	3130	172	32	18	113	3	5	copy fasta	ZBTB26	chr9	122910566	122936512
ZBTB26_chr9_122910566_122936512	0/1	t0002	3130	142	34	39	35	6	27	copy fasta	ZBTB26	chr9	122910566	122936512
ZBTB26_chr9_122910566_122936512	0/0	t0003	3130	12	10	2	0	0	0	copy fasta	ZBTB26	chr9	122910566	122936512
ZBTB26_chr9_122910566_122936512	0/0	t0004	3130	5	2	2	0	1	0	copy fasta	ZBTB26	chr9	122910566	122936512
ZBTB26_chr9_122910566_122936512	0/0	t0005	3130	3	0	0	3	0	0	copy fasta	ZBTB26	chr9	122910566	122936512
ZBTB26_chr9_122910566_122936512	0/0	t0006	3130	3	3	0	0	0	0	copy fasta	ZBTB26	chr9	122910566	122936512
ZBTB26_chr9_122910566_122936512	0/0	t0007	3130	2	0	0	2	0	0	copy fasta	ZBTB26	chr9	122910566	122936512
ZBTB26_chr9_122910566_122936512	0/0	t0008	3130	2	2	0	0	0	0	copy fasta	ZBTB26	chr9	122910566	122936512
ZBTB26_chr9_122910566_122936512	0/0	t0009	3130	2	1	1	0	0	0	copy fasta	ZBTB26	chr9	122910566	122936512
ZBTB26_chr9_122910566_122936512	0/0	t0010	3130	2	0	2	0	0	0	copy fasta	ZBTB26	chr9	122910566	122936512