JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C1QTNF12_chr1_1237453_1251722	1/1	t0001	128	280	73	49	107	12	37	copy fasta	C1QTNF12	chr1	1237453	1251722
C1QTNF12_chr1_1237453_1251722	0/0	t0002	127	37	3	5	25	4	0	copy fasta	C1QTNF12	chr1	1237453	1251722
C1QTNF12_chr1_1237453_1251722	0/0	t0003	128	4	0	2	2	0	0	copy fasta	C1QTNF12	chr1	1237453	1251722
C1QTNF12_chr1_1237453_1251722	0/0	t0004	128	2	2	0	0	0	0	copy fasta	C1QTNF12	chr1	1237453	1251722
C1QTNF12_chr1_1237453_1251722	0/0	t0005	95	1	0	0	0	0	1	copy fasta	C1QTNF12	chr1	1237453	1251722
C1QTNF12_chr1_1237453_1251722	0/0	t0006	128	1	1	0	0	0	0	copy fasta	C1QTNF12	chr1	1237453	1251722
C1QTNF12_chr1_1237453_1251722	0/0	t0007	127	1	1	0	0	0	0	copy fasta	C1QTNF12	chr1	1237453	1251722
C1QTNF12_chr1_1237453_1251722	0/0	t0008	127	1	0	0	1	0	0	copy fasta	C1QTNF12	chr1	1237453	1251722
C1QTNF12_chr1_1237453_1251722	0/0	t0009	128	1	0	0	1	0	0	copy fasta	C1QTNF12	chr1	1237453	1251722
C1QTNF1_chr17_79019169_79054788	1/1	t0001	2041	162	41	31	63	5	20	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	t0002	2065	86	5	20	53	0	8	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	t0003	2065	59	12	0	38	1	8	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	t0004	2041	11	0	0	11	0	0	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	t0005	2041	10	8	2	0	0	0	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	t0006	2041	9	7	0	0	0	2	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	t0007	2041	8	3	2	0	2	1	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	t0008	2041	6	6	0	0	0	0	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	t0009	2065	6	4	2	0	0	0	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	t0010	2041	5	0	0	5	0	0	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	t0011	2065	3	2	1	0	0	0	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	t0012	2041	2	0	0	2	0	0	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	t0013	2041	2	0	0	2	0	0	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	t0014	2030	2	2	0	0	0	0	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	t0015	2041	2	0	0	0	0	2	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	t0016	2041	2	1	1	0	0	0	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	t0017	2041	1	1	0	0	0	0	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	t0018	2041	1	1	0	0	0	0	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	t0019	2041	1	0	0	1	0	0	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	t0020	2041	1	0	0	1	0	0	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	t0021	2041	1	0	0	0	0	1	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	t0022	2041	1	0	0	0	1	0	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	t0023	2041	1	0	1	0	0	0	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	t0024	2041	1	1	0	0	0	0	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	t0025	2065	1	0	0	1	0	0	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	t0026	2065	1	0	0	1	0	0	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	t0027	2041	1	1	0	0	0	0	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	t0028	2030	1	1	0	0	0	0	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	t0029	2041	1	1	0	0	0	0	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	t0030	2041	1	0	0	1	0	0	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	t0031	2065	1	0	0	0	1	0	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	t0032	2065	1	0	0	1	0	0	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF1_chr17_79019169_79054788	0/0	t0033	2041	1	1	0	0	0	0	copy fasta	C1QTNF1	chr17	79019169	79054788
C1QTNF2_chr5_160342754_160375626	0/1	t0001	1536	135	24	34	50	7	19	copy fasta	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	t0002	1538	100	1	21	66	1	11	copy fasta	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	t0003	1538	81	23	7	43	2	6	copy fasta	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	t0004	1537	54	3	7	38	3	3	copy fasta	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	t0005	1538	21	13	4	0	2	2	copy fasta	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	t0006	1537	12	10	1	1	0	0	copy fasta	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	t0007	1538	7	6	1	0	0	0	copy fasta	C1QTNF2	chr5	160342754	160375626
C1QTNF2_chr5_160342754_160375626	0/0	t0008	1538	5	5	0	0	0	0	copy fasta	C1QTNF2	chr5	160342754	160375626