JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZBTB26_chr9_122910566_122936512	0/0	t0011	3130	1	1	0	0	0	0	copy fasta	ZBTB26	chr9	122910566	122936512
ZBTB26_chr9_122910566_122936512	0/0	t0012	3130	1	0	1	0	0	0	copy fasta	ZBTB26	chr9	122910566	122936512
ZBTB26_chr9_122910566_122936512	0/0	t0013	3130	1	1	0	0	0	0	copy fasta	ZBTB26	chr9	122910566	122936512
ZBTB26_chr9_122910566_122936512	0/0	t0014	3130	1	0	0	1	0	0	copy fasta	ZBTB26	chr9	122910566	122936512
ZBTB26_chr9_122910566_122936512	0/0	t0015	3130	1	0	1	0	0	0	copy fasta	ZBTB26	chr9	122910566	122936512
ZBTB26_chr9_122910566_122936512	0/0	t0016	3130	1	1	0	0	0	0	copy fasta	ZBTB26	chr9	122910566	122936512
ZBTB26_chr9_122910566_122936512	0/0	t0017	3130	1	0	1	0	0	0	copy fasta	ZBTB26	chr9	122910566	122936512
ZBTB26_chr9_122910566_122936512	0/0	t0018	3130	1	0	1	0	0	0	copy fasta	ZBTB26	chr9	122910566	122936512
ZBTB26_chr9_122910566_122936512	0/0	t0019	3130	1	0	0	1	0	0	copy fasta	ZBTB26	chr9	122910566	122936512
ZBTB26_chr9_122910566_122936512	0/0	t0020	3130	1	1	0	0	0	0	copy fasta	ZBTB26	chr9	122910566	122936512
ZBTB26_chr9_122910566_122936512	0/0	t0021	3130	1	0	0	1	0	0	copy fasta	ZBTB26	chr9	122910566	122936512
ZBTB26_chr9_122910566_122936512	0/0	t0022	3130	1	1	0	0	0	0	copy fasta	ZBTB26	chr9	122910566	122936512
ZBTB26_chr9_122910566_122936512	0/0	t0023	3130	1	1	0	0	0	0	copy fasta	ZBTB26	chr9	122910566	122936512
ZBTB2_chr6_151359115_151396559	0/0	t0001	1559	145	39	15	83	0	8	copy fasta	ZBTB2	chr6	151359115	151396559
ZBTB2_chr6_151359115_151396559	0/0	t0002	1558	99	5	29	44	11	10	copy fasta	ZBTB2	chr6	151359115	151396559
ZBTB2_chr6_151359115_151396559	1/1	t0003	1559	69	25	17	7	2	16	copy fasta	ZBTB2	chr6	151359115	151396559
ZBTB2_chr6_151359115_151396559	0/0	t0004	1558	37	10	2	19	2	4	copy fasta	ZBTB2	chr6	151359115	151396559
ZBTB2_chr6_151359115_151396559	0/0	t0005	1558	20	0	10	7	1	2	copy fasta	ZBTB2	chr6	151359115	151396559
ZBTB2_chr6_151359115_151396559	0/0	t0006	1558	4	1	0	3	0	0	copy fasta	ZBTB2	chr6	151359115	151396559
ZBTB2_chr6_151359115_151396559	0/0	t0007	1558	4	4	0	0	0	0	copy fasta	ZBTB2	chr6	151359115	151396559
ZBTB2_chr6_151359115_151396559	0/0	t0008	1558	3	1	0	2	0	0	copy fasta	ZBTB2	chr6	151359115	151396559
ZBTB2_chr6_151359115_151396559	0/0	t0009	1558	2	2	0	0	0	0	copy fasta	ZBTB2	chr6	151359115	151396559
ZBTB2_chr6_151359115_151396559	0/0	t0010	1558	1	0	1	0	0	0	copy fasta	ZBTB2	chr6	151359115	151396559
ZBTB2_chr6_151359115_151396559	0/0	t0011	1558	1	1	0	0	0	0	copy fasta	ZBTB2	chr6	151359115	151396559
ZBTB2_chr6_151359115_151396559	0/0	t0012	1559	1	0	0	0	0	1	copy fasta	ZBTB2	chr6	151359115	151396559
ZBTB2_chr6_151359115_151396559	0/0	t0013	1558	1	0	0	0	0	1	copy fasta	ZBTB2	chr6	151359115	151396559
ZBTB2_chr6_151359115_151396559	0/0	t0014	1558	1	0	0	1	0	0	copy fasta	ZBTB2	chr6	151359115	151396559
ZBTB32_chr19_35699558_35722038	1/1	t0001	574	378	85	69	172	9	41	copy fasta	ZBTB32	chr19	35699558	35722038
ZBTB32_chr19_35699558_35722038	0/0	t0002	574	18	6	0	2	3	7	copy fasta	ZBTB32	chr19	35699558	35722038
ZBTB32_chr19_35699558_35722038	0/0	t0003	574	4	0	0	4	0	0	copy fasta	ZBTB32	chr19	35699558	35722038
ZBTB32_chr19_35699558_35722038	0/0	t0004	574	1	1	0	0	0	0	copy fasta	ZBTB32	chr19	35699558	35722038
ZBTB32_chr19_35699558_35722038	0/0	t0005	574	1	0	1	0	0	0	copy fasta	ZBTB32	chr19	35699558	35722038
ZBTB33_chrX_120245812_120263398	0/1	t0001	3235	124	13	22	73	5	10	copy fasta	ZBTB33	chrX	120245812	120263398
ZBTB33_chrX_120245812_120263398	1/0	t0002	3235	122	22	22	69	1	7	copy fasta	ZBTB33	chrX	120245812	120263398
ZBTB33_chrX_120245812_120263398	0/0	t0003	3235	20	13	5	0	2	0	copy fasta	ZBTB33	chrX	120245812	120263398
ZBTB33_chrX_120245812_120263398	0/0	t0004	3234	10	0	0	8	0	2	copy fasta	ZBTB33	chrX	120245812	120263398
ZBTB33_chrX_120245812_120263398	0/0	t0005	3236	9	6	3	0	0	0	copy fasta	ZBTB33	chrX	120245812	120263398
ZBTB33_chrX_120245812_120263398	0/0	t0006	3235	9	0	4	0	1	4	copy fasta	ZBTB33	chrX	120245812	120263398
ZBTB33_chrX_120245812_120263398	0/0	t0007	3236	4	0	0	3	0	1	copy fasta	ZBTB33	chrX	120245812	120263398
ZBTB33_chrX_120245812_120263398	0/0	t0008	3235	4	4	0	0	0	0	copy fasta	ZBTB33	chrX	120245812	120263398
ZBTB33_chrX_120245812_120263398	0/0	t0009	3235	4	4	0	0	0	0	copy fasta	ZBTB33	chrX	120245812	120263398
ZBTB33_chrX_120245812_120263398	0/0	t0010	3234	3	3	0	0	0	0	copy fasta	ZBTB33	chrX	120245812	120263398
ZBTB33_chrX_120245812_120263398	0/0	t0011	3235	3	3	0	0	0	0	copy fasta	ZBTB33	chrX	120245812	120263398
ZBTB33_chrX_120245812_120263398	0/0	t0012	3235	3	0	0	3	0	0	copy fasta	ZBTB33	chrX	120245812	120263398
ZBTB33_chrX_120245812_120263398	0/0	t0013	3235	2	2	0	0	0	0	copy fasta	ZBTB33	chrX	120245812	120263398
ZBTB33_chrX_120245812_120263398	0/0	t0014	3235	2	1	1	0	0	0	copy fasta	ZBTB33	chrX	120245812	120263398
ZBTB33_chrX_120245812_120263398	0/0	t0015	3235	2	1	1	0	0	0	copy fasta	ZBTB33	chrX	120245812	120263398
ZBTB33_chrX_120245812_120263398	0/0	t0016	3235	2	0	0	2	0	0	copy fasta	ZBTB33	chrX	120245812	120263398
ZBTB33_chrX_120245812_120263398	0/0	t0017	3231	1	0	0	1	0	0	copy fasta	ZBTB33	chrX	120245812	120263398
ZBTB33_chrX_120245812_120263398	0/0	t0018	3235	1	0	0	0	0	1	copy fasta	ZBTB33	chrX	120245812	120263398