JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZBTB33_chrX_120245812_120263398	0/0	t0019	3235	1	0	0	1	0	0	copy fasta	ZBTB33	chrX	120245812	120263398
ZBTB33_chrX_120245812_120263398	0/0	t0020	3234	1	1	0	0	0	0	copy fasta	ZBTB33	chrX	120245812	120263398
ZBTB33_chrX_120245812_120263398	0/0	t0021	3236	1	1	0	0	0	0	copy fasta	ZBTB33	chrX	120245812	120263398
ZBTB33_chrX_120245812_120263398	0/0	t0022	3237	1	1	0	0	0	0	copy fasta	ZBTB33	chrX	120245812	120263398
ZBTB33_chrX_120245812_120263398	0/0	t0023	3235	1	0	0	0	0	1	copy fasta	ZBTB33	chrX	120245812	120263398
ZBTB33_chrX_120245812_120263398	0/0	t0024	3236	1	0	0	1	0	0	copy fasta	ZBTB33	chrX	120245812	120263398
ZBTB33_chrX_120245812_120263398	0/0	t0025	3235	1	0	1	0	0	0	copy fasta	ZBTB33	chrX	120245812	120263398
ZBTB33_chrX_120245812_120263398	0/0	t0026	3235	1	1	0	0	0	0	copy fasta	ZBTB33	chrX	120245812	120263398
ZBTB33_chrX_120245812_120263398	0/0	t0027	3235	1	0	0	1	0	0	copy fasta	ZBTB33	chrX	120245812	120263398
ZBTB33_chrX_120245812_120263398	0/0	t0028	3235	1	0	1	0	0	0	copy fasta	ZBTB33	chrX	120245812	120263398
ZBTB33_chrX_120245812_120263398	0/0	t0029	3235	1	0	1	0	0	0	copy fasta	ZBTB33	chrX	120245812	120263398
ZBTB34_chr9_126855639_126890878	1/1	t0001	5076	116	34	27	35	5	13	copy fasta	ZBTB34	chr9	126855639	126890878
ZBTB34_chr9_126855639_126890878	0/0	t0002	5073	50	3	7	32	2	6	copy fasta	ZBTB34	chr9	126855639	126890878
ZBTB34_chr9_126855639_126890878	0/0	t0003	5076	14	6	7	0	1	0	copy fasta	ZBTB34	chr9	126855639	126890878
ZBTB34_chr9_126855639_126890878	0/0	t0004	5072	10	0	0	9	0	1	copy fasta	ZBTB34	chr9	126855639	126890878
ZBTB34_chr9_126855639_126890878	0/0	t0005	5076	8	1	0	3	2	2	copy fasta	ZBTB34	chr9	126855639	126890878
ZBTB34_chr9_126855639_126890878	0/0	t0006	5073	7	0	0	7	0	0	copy fasta	ZBTB34	chr9	126855639	126890878
ZBTB34_chr9_126855639_126890878	0/0	t0007	5076	7	0	1	0	1	5	copy fasta	ZBTB34	chr9	126855639	126890878
ZBTB34_chr9_126855639_126890878	0/0	t0008	5076	3	3	0	0	0	0	copy fasta	ZBTB34	chr9	126855639	126890878
ZBTB34_chr9_126855639_126890878	0/0	t0009	5075	3	3	0	0	0	0	copy fasta	ZBTB34	chr9	126855639	126890878
ZBTB34_chr9_126855639_126890878	0/0	t0010	5076	2	0	0	2	0	0	copy fasta	ZBTB34	chr9	126855639	126890878
ZBTB34_chr9_126855639_126890878	0/0	t0011	5076	2	2	0	0	0	0	copy fasta	ZBTB34	chr9	126855639	126890878
ZBTB34_chr9_126855639_126890878	0/0	t0012	5076	2	0	0	0	1	1	copy fasta	ZBTB34	chr9	126855639	126890878
ZBTB34_chr9_126855639_126890878	0/0	t0013	5073	2	0	0	0	0	2	copy fasta	ZBTB34	chr9	126855639	126890878
ZBTB34_chr9_126855639_126890878	0/0	t0014	5076	2	2	0	0	0	0	copy fasta	ZBTB34	chr9	126855639	126890878
ZBTB34_chr9_126855639_126890878	0/0	t0015	5072	1	0	0	1	0	0	copy fasta	ZBTB34	chr9	126855639	126890878
ZBTB34_chr9_126855639_126890878	0/0	t0016	5072	1	0	0	1	0	0	copy fasta	ZBTB34	chr9	126855639	126890878
ZBTB34_chr9_126855639_126890878	0/0	t0017	5076	1	1	0	0	0	0	copy fasta	ZBTB34	chr9	126855639	126890878
ZBTB34_chr9_126855639_126890878	0/0	t0018	5076	1	0	1	0	0	0	copy fasta	ZBTB34	chr9	126855639	126890878
ZBTB34_chr9_126855639_126890878	0/0	t0019	5072	1	1	0	0	0	0	copy fasta	ZBTB34	chr9	126855639	126890878
ZBTB34_chr9_126855639_126890878	0/0	t0020	5096	1	1	0	0	0	0	copy fasta	ZBTB34	chr9	126855639	126890878
ZBTB34_chr9_126855639_126890878	0/0	t0021	5076	1	0	1	0	0	0	copy fasta	ZBTB34	chr9	126855639	126890878
ZBTB34_chr9_126855639_126890878	0/0	t0022	5076	1	1	0	0	0	0	copy fasta	ZBTB34	chr9	126855639	126890878
ZBTB34_chr9_126855639_126890878	0/0	t0023	5076	1	1	0	0	0	0	copy fasta	ZBTB34	chr9	126855639	126890878
ZBTB34_chr9_126855639_126890878	0/0	t0024	5076	1	0	0	1	0	0	copy fasta	ZBTB34	chr9	126855639	126890878
ZBTB34_chr9_126855639_126890878	0/0	t0025	5076	1	0	0	0	0	1	copy fasta	ZBTB34	chr9	126855639	126890878
ZBTB34_chr9_126855639_126890878	0/0	t0026	5076	1	0	0	1	0	0	copy fasta	ZBTB34	chr9	126855639	126890878
ZBTB34_chr9_126855639_126890878	0/0	t0027	5076	1	0	0	1	0	0	copy fasta	ZBTB34	chr9	126855639	126890878
ZBTB34_chr9_126855639_126890878	0/0	t0028	5073	1	1	0	0	0	0	copy fasta	ZBTB34	chr9	126855639	126890878
ZBTB34_chr9_126855639_126890878	0/0	t0029	5076	1	0	0	1	0	0	copy fasta	ZBTB34	chr9	126855639	126890878
ZBTB34_chr9_126855639_126890878	0/0	t0030	5073	1	0	0	1	0	0	copy fasta	ZBTB34	chr9	126855639	126890878
ZBTB34_chr9_126855639_126890878	0/0	t0031	5073	1	0	0	0	0	1	copy fasta	ZBTB34	chr9	126855639	126890878
ZBTB34_chr9_126855639_126890878	0/0	t0032	5076	1	0	0	1	0	0	copy fasta	ZBTB34	chr9	126855639	126890878
ZBTB37_chr1_173863380_173908547	1/0	t0001	17672	68	9	12	34	4	8	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0002	17676	23	0	2	20	0	1	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0003	17670	21	4	1	13	1	2	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0004	17672	18	1	3	7	3	4	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0005	17669	16	0	6	8	1	1	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/1	t0006	17676	13	0	0	6	1	5	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0007	17673	9	0	5	2	0	2	copy fasta	ZBTB37	chr1	173863380	173908547