JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZBTB37_chr1_173863380_173908547	0/0	t0008	17672	9	0	1	8	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0009	17670	9	0	0	9	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0010	17669	9	9	0	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0011	17676	9	9	0	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0012	17674	6	6	0	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0013	17673	5	1	4	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0014	17672	5	0	0	4	0	1	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0015	17669	4	0	1	3	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0016	17671	4	0	0	3	0	1	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0017	17670	4	0	0	1	0	3	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0018	17669	4	0	2	0	2	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0019	17675	4	0	2	1	1	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0020	17677	4	4	0	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0021	17672	3	0	1	1	1	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0022	17672	3	0	0	3	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0023	17670	3	0	0	3	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0024	17669	3	0	0	3	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0025	17669	3	3	0	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0026	17677	3	0	0	3	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0027	17676	3	0	0	0	0	3	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0028	17677	3	0	0	2	0	1	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0029	17676	3	3	0	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0030	17673	3	2	1	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0031	17673	2	0	0	1	0	1	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0032	17672	2	0	0	2	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0033	17670	2	0	0	2	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0034	17670	2	0	0	2	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0035	17669	2	0	2	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0036	17669	2	2	0	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0037	17668	2	2	0	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0038	17669	2	2	0	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0039	17669	2	2	0	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0040	17676	2	0	0	2	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0041	17676	2	0	0	2	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0042	17676	2	2	0	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0043	17677	2	1	1	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0044	17677	2	0	2	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0045	17676	1	0	0	1	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0046	17672	1	0	0	0	0	1	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0047	17673	1	0	0	1	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0048	17672	1	0	0	1	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0049	17672	1	0	0	0	1	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0050	17673	1	0	0	0	0	1	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0051	17673	1	0	1	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0052	17672	1	0	1	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0053	17672	1	0	1	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0054	17672	1	0	0	1	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0055	17672	1	0	1	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0056	17671	1	0	1	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0057	17672	1	0	0	1	0	0	copy fasta	ZBTB37	chr1	173863380	173908547