JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZBTB37_chr1_173863380_173908547	0/0	t0058	17673	1	0	1	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0059	17672	1	0	0	1	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0060	17672	1	0	0	1	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0061	17672	1	0	0	0	0	1	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0062	17672	1	0	0	0	0	1	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0063	17672	1	1	0	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0064	17673	1	0	1	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0065	17672	1	0	0	1	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0066	17672	1	1	0	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0067	17672	1	0	1	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0068	17672	1	0	1	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0069	17672	1	0	0	1	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0070	17672	1	0	0	1	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0071	17672	1	0	0	0	1	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0072	17672	1	0	1	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0073	17671	1	0	0	1	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0074	17671	1	0	1	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0075	17672	1	0	1	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0076	17671	1	0	0	1	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0077	17672	1	0	0	1	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0078	17673	1	0	0	1	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0079	17670	1	0	0	1	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0080	17670	1	0	0	1	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0081	17669	1	0	1	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0082	17670	1	0	0	1	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0083	17670	1	0	0	1	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0084	17670	1	0	0	0	1	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0085	17670	1	0	0	1	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0086	17670	1	0	0	1	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0087	17671	1	0	0	1	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0088	17672	1	0	0	1	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0089	17670	1	0	0	1	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0090	17671	1	0	0	1	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0091	17670	1	0	0	1	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0092	17670	1	1	0	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0093	17670	1	0	0	0	0	1	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0094	17670	1	1	0	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0095	17670	1	0	0	0	0	1	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0096	17676	1	0	0	1	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0097	17668	1	1	0	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0098	17668	1	1	0	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0099	17669	1	0	1	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0100	17670	1	0	0	0	0	1	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0101	17670	1	1	0	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0102	17668	1	1	0	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0103	17669	1	1	0	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0104	17669	1	1	0	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0105	17669	1	0	0	0	1	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0106	17668	1	1	0	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0107	17669	1	1	0	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547