JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ZBTB37_chr1_173863380_173908547	0/0	t0108	17669	1	1	0	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0109	17669	1	1	0	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0110	17670	1	1	0	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0111	17677	1	0	0	1	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0112	17676	1	0	0	1	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0113	17676	1	0	0	1	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0114	17676	1	0	0	0	0	1	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0115	17676	1	0	0	0	0	1	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0116	17676	1	0	0	1	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0117	17676	1	1	0	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0118	17676	1	0	0	1	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0119	17676	1	0	0	1	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0120	17676	1	0	0	1	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0121	17678	1	1	0	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0122	17676	1	1	0	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0123	17672	1	1	0	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0124	17679	1	1	0	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0125	17676	1	1	0	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0126	17677	1	1	0	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0127	17676	1	1	0	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0128	17677	1	1	0	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0129	17675	1	1	0	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0130	17676	1	1	0	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0131	17676	1	1	0	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0132	17676	1	1	0	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0133	17677	1	1	0	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0134	17676	1	1	0	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0135	17667	1	0	1	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0136	17668	1	0	1	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0137	17677	1	1	0	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB37_chr1_173863380_173908547	0/0	t0138	17676	1	1	0	0	0	0	copy fasta	ZBTB37	chr1	173863380	173908547
ZBTB38_chr3_141363504_141454792	0/0	t0001	4427	71	27	11	22	2	9	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	1/0	t0002	4427	71	4	13	39	4	10	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	t0003	4428	42	0	5	36	0	1	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	t0004	4429	20	18	2	0	0	0	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	t0005	4427	7	3	4	0	0	0	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	t0006	4428	7	0	4	3	0	0	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	t0007	4427	5	5	0	0	0	0	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	t0008	4427	5	1	1	0	2	1	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	t0009	4427	4	1	0	3	0	0	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	t0010	4427	4	4	0	0	0	0	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	t0011	4428	4	0	1	0	1	2	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	t0012	4427	3	0	0	0	0	3	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	t0013	4427	3	2	1	0	0	0	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	t0014	4427	3	0	0	3	0	0	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	t0015	4428	2	2	0	0	0	0	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	t0016	4427	2	2	0	0	0	0	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	t0017	4427	2	0	0	2	0	0	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/0	t0018	4427	2	0	0	0	0	2	copy fasta	ZBTB38	chr3	141363504	141454792
ZBTB38_chr3_141363504_141454792	0/1	t0019	4428	1	0	0	0	0	0	copy fasta	ZBTB38	chr3	141363504	141454792